Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1968 ]


Position: chr13:15,245,953-15,250,994 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGCGCATGCTCTAACATACATAcatataactgatgttaaaacttttaagctaaggttatg
aataaaatatggatttgggctaataatactttatcggtatttgttcattaaatggagtga
atatacaacaagagtaaaatatttataaatggagtgaacatacaacaagagtaaaatatt
tatgagtaactgcacataggcacataaaagtttctgtatctttacttttttggtaactat
aaactaccaatttcattagggaaatattcatatactaacttagaagcaagaaaaggtcat
ttctatgggagagaaacaaagaggaaatctatgatagttggcaagatcagaagatgaggg
gctaaatatggtgccagacccagacacaagtctgaggtgcacagccaggaagactggtca
acagagctcaaattgagctcccgttgtgcactggaacactggcatactttgtaagtttac
aaatagaatttcagaaggccttaccttatttatagactagtaaattagtctagtaaagga
gatactgagacttagtatcatagagaatagaattaaagagactaaacagaaaagagaaaa
gtctcttctatacatgaggaacctgtgaatattacattgaatgttgagcattcagacctg
ggcacatcacagagaagagtagaattgtctgatggggaaaatgtcccagtactggtttct
tgcgagaaaattgaatgtgccctatagtgtcagcctgagttttgtacaatcatgctccac
ccagtatgtgattgtttcatgggtgctgccaaatgctgtccaagaaactgactgacaggt
aaatgaggcacaatgaagaattctgggaaagataagatgggtatgcacgcaactgtggta
tgtttaatgtaccttccaagtatctagtgattctataatttgtttcagtttattctctaa
tgccttaaaaagcagaccaaccttgcaactatttttaaccgtagaattctgtattctttc
ttgatagtgtgccagttctgacctatgcctcaagtggctatatgtgtctcttcctttatt
ttttctttgtccaggaacaggctcaggctagcctactagcagatgagaagtctgtcagcc
acaccagcagcagccagccataaaagtgactacagacaagaccagagcagaccacacata
ccttgatttctaaatgaattactatagatcacacagacacgttgagtacactaacttcca
ccacccagaattaatcagtaggaaaacaacttgggtccttacacatactcaccctaccaa
atggaacttggtttccttggttttataaaatcccagttggttctacctggcaaaagcctc
gaaaggtggtgacagatgaaacctcttacccttaaacagctatcagctcaaaactataaa
cagtaaataccctgaagcctgtctcaaaccacagcccaagggagcagcagcacttgcatg
tcctacttctgtgatctttaaggaaaggttggatgtgcagccttggggatgtttttgaat
ggtgcttcaagtcagagttgtctcttgggaagtgtcagcagctccaatttctcagagttt
gcccatgtggagaaaaataatgaaaagatgatcttcagagttcttaagggtgactgccca
aggactaacaaaatccagagtttgaaaatgtccaaagaaatacttgacttgtggcagcta
tatgaatgaatagaacattcattagaacattcttagagcttgaatccacatcatatacca
acatgcaagtgttccttgtagtaaccacacacacacacacacacacacacacacatacat
gcacacacatgcacatacacactccagcctcaggtgtgcacaccccctccaggtcccctg
ggaggtatagttagcactgagcccacatgggaaggggcatcagaggaacaggttaagctc
ttgagagatcagggaacttggagatttggggagaaggaagtctcaggtcactgtttccta
aggctaaactggaatccaggcttgcttagtgtagccaaacccaaacctgagtatgaaggg
gagacttactttctgcctcactctcagggcatttttcagtgggtagatgtggtgcgtgac
agctttgcctgcacctgcaggcacacaccagcacaggccacagccctgaaaccctgtaga
gttgagagacaattcagctgtaacgctcagctttagacactggccacctgtctttcaagg
tccacagatgtcagttcctggtggcaaaactgccaatagagtgtgggagcttaacacaca
tgtacagagtctggtcctcagagtcccacctccacatatacatttacagactgattttgt
ttttgttgttgtttgtttgtttgtttgttttattcagttagaatcacattgtttcataat
agcaattcttggtttgaaattgtccatttttcattacctatctacctgtctacctatctt
atctatctatctatctatctatcatctatctatctatctatctatctatctatctatcta
tcgatcgatctatctatcgatctatctaactaactacccaacctatctatcctatctatc
aatctatttagaccaggtcttaaactggccttgaactaggtttatggaccaggatgaacc
aggagtccagatgcccctgtacctggctcccttctattttgtaacaaccttcagatttcc
ctttatgtacttaaatagcaccatcctcaccacagccatgcaaacccaaacttctttttg
aagaaatgaaaccaaaaatcgtattaaggagatatgagttgtatctgccaatgaatctgg
ctatactcatagtctatttactagttcttgcctcagttttctcattcattaatggaacta
tttaattaattcatgtcttacagtcttttgttttaagagcataacctcagcagggcatgg
tggcacacacctttaatcccagcacacaggaggcagaggcaggcggatttctgagttcta
ggccagcctggtctacaaagtgagttccaggacagccagggctacatagagaaaccctgt
ctcaaaaaacgaacaaacaaacaaacaaaaaaagagcataacctctattcagtgtttgaa
tcttattcttggcacatagtaagcaatgaatttcagtttgtaattagtatatttaccttt
ctgtaaatactgctgcttctgttaaatcttttgttttgagtctgctcttaatcattgagc
agactggaaggaagtttttcagtggcagttcaaagtctgttactataaggaaaaagcttt
ccaggttcattttaggttctaaatgcagaaacagagtgaccttttttttttttttttttt
ttttttttttttactttttattggatctttgggaatttcacattttgcactccataccta
tttatctcccactctccttgtatgtaccctccacccttgctcccacccccacagcagagg
aaaaagatatcttgttgtggaagctgtagcgtatcccacagtattcccttttgttcacac
ttctttgctttcaaatgttcattgcagtgactccttggtctggtacgatgatagtatggg
acctctggctttttctactttatcaatcctggaaactcactgggactcctctcaaatatc
ctgttgtatccctgtgtcatagatatactgtagttttggatctgtaggaccacccccttc
atgtactccagcaattcatctactgggtgagccaattcaaagccctggatctgggcctga
gagatatctcaaatgttcaaccctccttctcttctactctcctgccctctgggtagttca
ctggcaacccccacaaccagggtcagctctaccctgctgtctacatgatgtgcaggttct
gatatcctgcactttgcagtcagtaaaggatataccaagttcttgttgtctggagtccag
ctctcttgcctgccatatgtggtaaagagcaaaggagggagaggagggggtgtctcttcc
ttgttggagccactaatgacaccacaatcttaagtgactatattaacaatagacagaaag
ggctattttagtagtagtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tagcgcacatttgatactaagtctctcctatcctgtgctgtggtcaaatttaccatgtag
ttaaagatgatcctgagtttctgagcctcctgaatgaatgtgcttggattgcaggcatgc
tccacaattccaaagttttcaactgtcaaatgaagcaaaagcaataaagaggtaccagga
gtaatttctgtattcattatcacacagctgcaataaagataaagaggtgaaaacatacac
agatattcacaattttgtatttgttttcttacaaatgatttggtgcatatatcttagacc
ctaaatctgatagatctgtgaaaatagttggagaagaataattaacaatgtgagagcaga
atgtggacatgttttattacatagaagaaaagcaatgaatatcttacaattttacatgca
tatatcttgaggtaaagactaatttacgatatattaagatcagttgctataaaaggcata
cactcaaattcttatttaaaattttgaagactgaaaaatccaaaaattcagttttaagtc
tttatttctaatatattttcacttttatttgaatacataacactttttttccataatagc
tgcatggaaatgctttcaaataatctttcacactttgtggatatgccacagcagaagtaa
ttttaattaaaatcatatgaactagaaggagagctaaatatattagccatgtgtataaat
tatacaactttgcaaatgctatgttaaaggctactggaaaaagtaccaatttttacagtt
tggaatgtttcccccaccccaaggcctatgctgttcggaaGTGCTGGAACCTTAAGAAAT
GG
Primer
(+)ggcgcatgctctaacatacata
(+)CCATTTCTTAAGGTTCCAGCAC


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.