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Mouse element [ mm1967 ]


Position: chr13:15,207,680-15,213,289 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ATCCCTGAGCCAGTTTTAGCTTtttggacctcttagattgtgctttcccaccccctgaga
ggtatctaggcacttccctacagctccgcatccacacctgtggcaaggtggggtaagcac
agtcagacaccccacattcagcgaaccagacagggaccagcagtgcattattaatatttt
ataacaaaaaaagaaagactccccaaaaaatgaaaggaagagagagagagagagagagag
agagagagagagagagagaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaag
gaaggaaggaaggaaggaaaacctaatatacagtgatggtctccactgagagtaaattag
atgagatactgctagacaaagatctcaacaacaaatatatcaaagaaattataaattcct
ggatgaatctcaaaaaatttaataaaataaaggcaatatagagactagagagatgatgca
gcagttattagtaactggggcttgtggtggtttgaacatgcttggcccagggagtagcac
tatttggaggtatggccttgttggaataagtgtggccttgttggaggaagtgtgtcactg
tgggtgtggattttaagaccttcctcataccagctgtctagaagccagtattctcctagc
agcctttagatgaagatgtagaactctcagttcctcctgcaccatgcctgctgggatgct
gtcttgatgataatggactgaacctctgaacctgtaagccagccccaaataaatgttgtc
cttataagagttgccttgatcatttcgtctcttcacagcagtaaaaccctaaccaagaca
gggctcttccaaaggacctgagtttggttcaaagcagccatgtcagatggctcacagctg
cctgtaactacagttccaaggcatctgacaccctcttctggacttcatatatgcatgtag
gtatacacacacatacatactctcacacatgagcacagacatgcatgcacacacacaaaa
attttaaaattatatatatatatatatatatatatatatataagcgatatgaaagatgaa
ttcaagataaagatttaaatactggagaaaaaatttaaatacttggaataaagaacataa
tacatcaaatgaagagctccaaggaaaggcacaccaatagaatggatcagggagagacag
aatattgtagcttgaagacaacgcacaagacctaaacctttcaaacaaaaatgaataata
aaatatatatgtagcactttcatgaaaaatggaatactataaaaagtacaaaagggagaa
gtatttcatagaaaatattttcaacaaaataataacagaaaattattcaaattatggaaa
tagatgctgtcttagtcagggtttctattcctgcacaaacatcatgaccaagaagcaagt
tggggaggaaagggtttattcggcttacacttccatactgctgttcatcaccaaggaagt
caggactggaactcaagcaggtcaggaagcaggagctgatgcagaggccatggagggatg
ttcattactggcttgcctcacctggcttgctcaacctgctttcttatagaaccaagacta
ccagccctgagatggtcccacccacaaggggcctttcccccttgatcactaattgagaaa
atgccttacagttggatctcatggaggcatttcctcaactgaagctcctttttctgtggt
aactccagctgtgtcaagttgacacaaaactagccagtacagatgccaaatcaaatgcag
aatgcatttagaagagaaaataacaagatcagaaattaacctttcctcatattgtagcta
agccaataaatatacagaactaagaaaatatattgaaaatattaaatcatatataaagtt
aagtctatcagaacaactgtttcaataaaatattttaaaactttgaattatgtatttcaa
atatcaaaagacaaaaactgccaagtcatactactaggctcagcaaaactatctgtcata
attgaagaataaagaaaagattgatatgataaaactaggtccaaggaaataattattgtt
acaccagctctgtagcagacatgtcaaggaatcctttggtcagaagagaaagaccaacgc
atgcatgaagccgtcagaaagataaaacacactgacataatagctatgacaagaactaat
aaaataaactaagtactacaaaatgaaatgacagaaattaatagtttcaataataattat
gaatttatggcttaatccctcaatcaaaagacacaaacaagaatgtttaaccgaaaagaa
ggatcctactatttgtgtaccccaagaaatccacctcactattgaggtttggtctgttgc
tatgtatgctaatgttaatcctaccccctcccaagtctggttgtctctaagagatgagga
gatctttgtgagtattaagtgatgttatgtaaccttgctccttaatttaagactattggt
tgaataaagatgccttcgacctgtagctgggcagaagagaggtagatgggaatttggttt
ctgggcttggggtctgagacaggaccacaggaggaaagagaagttggggacagaagatgc
tatggagtatgggatcgtgagaactggccacgagggctggccagtgagtgtaagagcagc
ccaggcagaacacagcaagtcatattttagggttagtggcggggaagtagacataatcgc
atagaggatagatatttgcccagctgtagtgctctgaaggcttactctaaatataaagcc
tgtgagtcttttatctgggaacttaatgatctaaagagaggtagaaactccaaattgatg
ttaaatatttaccacaacccctcactataaagaaaagatgttactgtaggatgaacagat
gaaaaatggtatttcaagaagacacaattagaaatcatggaagtgcatatcaacagactt
gacttcagttgttacattgactgaagcaaaggtaaccaccatgccaggtttgagaacacc
agtctccactcggcccacagggacagtgccaatgcctccaattttatagatatcctggag
gggcagtcgcagaggcttgtcagttggacgagttagtggtaggatacaatccaaagcttc
cagcagcgtggtgccactggcactgccatctttgcaggtgaagctttgagtgaagctctt
cctggggacaatgtgggcttcaatgtaaagaacgtgtcggtcaaagatgttagacgaggc
aatgttgctggtgacagcaaaaacaacccaccaatggaagcagctggcttcactgctcag
gtgattatcctgaaccatccaggccaaatcagtgctggctatgctcctgttctggattgt
cacactgcctacatagcatgcaagtttgctgagcttaaagaaaagatcgatcgtcgttct
ggtaagaagctggaagatggccccaaattcctgaagtctggtgatctgccattgttgata
tggtccctggcaagcccacgtgtgctgagagcttctctgactatcctctacttggtcatt
ttgctgttcgtgacatgaggcagacagttgctgtgggtgtcatcaaagctgtggacaaga
aggttgttggagctggcaaagtcaccaagtctgcccagaaagctcagaaggctaaatgaa
tattacccctaacacctgccaccccagtcttaatcagtggtggaagaacggcctcagaac
tgtttgtctcaattggccatttaagtttaatagtaaaagactggttaatgataacaatgc
atcataaaaccttcagaaggaaagaatgttttgtggaccttttttttttttttttttttt
tttgtgtgtgtgtgtgtgtgtgtgtgtgtgtggcagttttaagttattagttttcaaaat
cagtactttttaatggaaacaacttgaccaaaaatctgtcacagaattttgagaccatta
aaacacgttcaatgagaaaaaaaaaaaagaaagaaatcatggaagtgacactgttctatt
acaaagtagatttcaaaacaaaattaattagaagagataacagtcatttcagtcaattaa
gatcattaagtattaaattctaaacctgtatgccaaatttcacaaaatgaatattaccta
caaaatagtttccactgactatttatactctatttatattctaaacactctaatgtacag
aagtaccacagcacaataatggatgaatttaatatgcaatgttaatcagcaatggacaga
tctttctgacaatatatgtatcttaattaaatagcatcatatatcaaatgagcttactgg
atccagagaacattccacccaaacaatgaaaaatttactttcttctcagtatatcatgaa
actttttctaaaatagatcctatgatatgatgtaaagcaagtcctagtaaatataagtaa
attaaaataattgctcatgttctatatgatcagaaaaaagtacaaattaatagcaagaat
atataaaatatacaaactcatggatattgaaaaatacattaaatactgagtgggtaattg
aagaaatcaagaagaaaataaggggttgggacagatagctaatcagttaagagcacacat
actgctgtcaagacacaggttccagtctcaacacttatttggtaactccagttccgtggg
atctaatgcctcttttgacccccatggacacttgtcacacaagtcatacacatatttaca
tgcagacaaacacatatacatatataacaaaatataaagaacagagcaccaatggcttat
gttctaagatcaacaatgcacaaataggccctcataaaattgtaaagcttctgcaagaca
aaggacactgtcaataggacaaaatagcaacaaacagattgggaaaagatctgtagcaat
tctacatctaagaaatgttcaacatcattagtcatcagggaaatgcaaatcaaaacagcc
ttgagattccacctcactccagtcagaaaggctaagatcaaaaactcaagtgacagcaga
tgctggtgaggatgtgaagaggaacactcctccattgttggtgggattgcaagctgttac
aaccactctggaaatcagtctgccatttcctcagaaaattggacatagtactacctgagg
acctagctataccactcccaggcataaagccaaaagatgcttcaacatataacaaggaca
catgctccactacgttcacagcttatttataatgcttatttataatgagcagaagctgga
aacaacccaaatgtccctcaacagaggaatggatacagaaaatgtggtatatttacacaa
tagactattactcagctcttaaaatcaatgacttcatgaaattcacaggcagatggatga
aagtagaaaatatcatcctgagtgaggtaaaccattcacaaaagaacaaacatggtatgc
actcactgtaagtggataatagctcaaatgctcagaatacccaagatacaattcacagac
cacattaaGCTCAAGAAGAAGGAAGACCAA
Primer
(+)atccctgagccagttttagctt
(+)TTGGTCTTCCTTCTTCTTGAGC


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