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Mouse element [ mm1962 ]


Position: chr13:15,545,495-15,551,212 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGAGGGAAGAGGCAGACTTTCTttggcacttcccaatggaagcagcagagccatgacacc
attgacttcaccccattgccttctcacagtcactgtgagacagaagccatttttatgagc
tatgtaggcaaagtgaactcgtacgatgatcagtaaatggatggatgaaggatgtaaatc
ctggaccacctcatctggtacactactgtgtcagattaaacacatgggactatttatcat
taatctgaaaggtagagctttgagagctgaatagagatttttcagaaaagaaatggttaa
taaatatgttgaaaagtgttcaacacccttagacattaggggaaatgagagttacaacta
ttttgagagtctgccttacctagtcagaatggctgttcgcaaaaggtcaaatgacagggg
atgcttgcaaggttgtagggaaaaagaagtcttatttactgttcgtgggagtctagttta
gtataggtgctatagaaaacagtctgaaggctggaaagagaactaccacatgatccaaat
atcctgggtatatctaaaggactctagactttagacatgctcattcatgttcactgctac
tctactcataactcatttccaggaaatggaaacactctagatgctcatcaactgatgaat
ggataatgaaaatgtggtatgcatctacaacataatttattaatttatctgttataaaaa
caagatcacaaaatttgcaggtaaatggatgaaactgggaaaagttatagctaactaggt
catctaggtacagaacggtaaatactgcatgttctctcacccatgaatctttagatattc
atgttttatttggagtacctatagaaaccaggaagctagaaaagggtcaggggcagggtg
tgggcaggcttaagaggaggggctttaaaatgtaattgagagtgaaagcataaaatcata
agcaaaattcaattgtttcagaattgtaattgtgcagaagttcactagttggggacagga
acaagtgtttgtgtggcttctttaaatcagtggtgtggttttgtttgtttgtttgtttgt
ttgtgagttaatcagaaaaaagcaaatttaattaactaatttcaaatagaggtggaaagc
tagtagaacattgatgaggtgaaaatagagggaggggacacttggagtgggtgagaaagg
tttaagcagagatagagtgaggagatacagcagatgaagggtcagagaagagaattaacc
aacatgaagggtgcttgagaaatcgatatagaaacacgctatttgtaagccaactgaaaa
aaaaaaagatgtaagttttaaaaagttaaagacttagaagtgggcatattgtatggctgc
atagtactgttcctagagagccgttgttaattaaactaaatcctaatgctagatatgtga
tacctccttatgagctgttgatcggagaagccctagatgtcaccgaaacaataaggctct
tttaaaaaggatttttgagagaaaatctggctatgtagctacctctggcctggaacttgc
tatgttgatcacagcaagttctgtctgcctctacctacttcctgaatactagatcaagga
tgcacatcagcatacctggctgcagtacagactcttgccattcttcttgggtgctcatca
aatctaggtgataagacctgcctgcagaagataccatacactttgcttgcacagtctaga
gaaatcaaactagagtaagctggaagtttcttccatggtggctcactttcaaagtaagtg
acatgctatgcagttttcggcggaggaggtgataagtcactgctgctattatgcaactgt
gaatcctatgcactacagtgctaatcttccagtcaaggtatccacaggtgtacaatagtt
gcacaactatttttgctgtaaccaattgctctcagcttggatttgaagcttactctaaag
gaggaaataaatgcttgtatctggaggtcataaccctgagcaggggaattcactaccatt
attcaggtaacttgacagggaatcaaattgcactataaatatttacattcatacccatag
acaaatactacttttattttctgtcaaagaagctctttttgcagtcaacgacagtgaatg
cagagatgcttagctgttcaaggagcatagactgacagttgaatgctcagagccaagcaa
ggcattcacatgtccctgactaatgctcagaaaacactgcaggagaaggagcagaaagag
tttaagagccataaaattgtgagaagggatatgaaatgttttcttcagattgtgatgtag
ccatggcatgtatgaatgcattgcatgtattacacgtattgcaaacatgatcttacagca
acgtgtggttgcctgcattggatataaacattgggtttgtcaaaagtcaaacatgggtag
gtgagggaatcatgggctcctatccctccatgctgaatttttgtctactgatagattctt
tttagtcgtgtgaacaactgtatgcacctgaccctgtatacctgatcaggctccagtgga
tagttccaaacagtggtcatataggtggtcctgactaaactcagttgctcataaaaataa
aacaaaaagacatataagaaaggaacctgttatggggttttgataatagatttgagaaaa
agactagacagggtgtggtgagagtaagcaaaatgtaccatatatatgtatgaaattgtc
aaggagcaaatttaaagaagagaataaaaaagtagagtcctatatatattctatacatta
tgaacaaaaatagacaggtagctggaagacatgtagccatgtaccttatgctttcttttt
agctgtaccccccaacagtctatgacaatagcaaatgtatagccatgtacaatagcacct
tcatgtctcttcctctcctgcttgtgttctgtgacccacacattttacctggtgctcatg
gagcttctctcatgactaaaatgctaggctctcactaatcccactcatcctggccgattc
tgccattgtttaagggggtagcacattgctttctgtaattgtcccttttaacctcttact
ttgatctcaggactcctccttagaatcttatagtacgtaaggaaggatagaacctaatca
aatgagtattctagttctcaaacacatggtcactgctcacctaccatgacttgacctgag
attgcataactgttaattatatccctagaagtatgagccctggtagttctcagttcctat
gtatcaaaacatgggcaattttattcctcattggaaaactcactttgatatattactggc
tgtgtgtgagaagagatgagtagtgggtgagactcaaaagacatatctctaagacatgtt
attctaaagcccctttaagaaagatgggcatgtcctcaaggctactctattttggcatat
aacagtctctcagaatagtcagtttggtagaatggggtaaatttctctgactaagacagg
aaaaaaaatagtagagttaggcactgaacagaaaggcagagtgaataaaaatattgtatt
tttgatttttatagaagcatggctggaagaggaccaacagcatctattccagtgggaaac
actggacttgatggctttgagatatttgacttcatatatcccttcttttgtagtctcatt
ttgagtaaaaaagtctgtaaaacctacagtttgtgttagtgaattgtttagggtaaaacc
agcaaacacagaattctccagtgataaggtaggcacactgtgtgaatgagtgaagtgacg
tagactgtgcacaaccaaaacgccaatttacatgtctaattatgaaagacttttgtccca
gaggcctcttctgattgccctaactttgggaaacttaaaatcgatgtggagcatggctgc
caaggagatgggagatgatcaccaaggtagtggattgggtattgggctaaaagggaagaa
tcagatgagtgcagcagacagaaatgctcaactggggaacagcattgctcactaagctgc
tctgctggagatctagagaaagcttgttttatttatgaaaaggagggttagaaaaattca
tcccctagatgcctaaatcatcagcggaattctccacgctccctcatacctgctgtgagt
agtttctcatggcgtaggcaggcaaaaactttagtgtgggccacagttcagtgtcacgca
gcatccaaagagcctgaagttagcagaaattcaaagagagggttttagatcttcccaagt
tgtggtattggctgaagtccaagccaattatagctacatctccaaggtgaagaaggacac
agccaacatctgggttccatttataatcccaatgttccgggaagacagaagaactagtta
cacgagtgttgagtgagaagaccttagaagggcccatgtgcaatgcccttagaagcgttt
tcctgtctggcagctgccctgtgacatgagggagcttggctccttccattctgttgtatc
tgtaggagtgctctcatcttgggagtgctcaatattttccctgcaatggatacaggctgg
tacagaatcccagtgactggaaaatgggtgtgagcagctgaaaaaatggggaaaaaaaaa
agttctgcagagcctgttgtagtagggtgtttcattagctgtctacaaatgggttatcga
ggccctgggagtagatttagtaagattagacagaatgggcagctcaagcttagtttgact
aattctgcttgaatttttacacatggatttacctgcatgtaggtattaagaacagcattg
gacaccctctgaacccccaatcttgatttttatcatttgtcttagtggttatttttgtat
aacatgtaacaggctttctagccgctaggcctggagagagtacacttactttcctttctt
attgtcagctggcacatcatttttttctggtgttcctttggtcacaggaagtgaggttag
ggagaagaaaggggagaaacagggaaagacaaagaagagggaaaaaaaataaaaagcttg
agatcaagtgtaagctaaggtgggagaatccttttggctacacatacacaggatgtatta
gtgtgactctggctcactgaggctcatggaggaggcatggactgaaggcttcaattccta
gtgtacaaactccttgctggaccaactgaagcaaaaccatcagtcttatatcacagaagg
tgtctggccaaaatcaggaagaaaggaagggtgacctttatgaaggacaagtgattcaga
aatcaagtgctacttgtctgcctgtgtgcagttacttttttgtctagctaagaggaaaat
ggcttaattccagcacttgggaggcagaggcaggaggatttctgagttcgaggccagcct
ggtctacaaagtgagttccaggacagccagggctatacagagaaaccctgtctcgaaaaa
caaaacaaaacaaaacaaaacaaaacaacaaaacaaaacaaaacaaagaggaaaatggca
tcctcttgaagaaggctctcattgcaggggaaacaaactatagggcagactatgtaaaat
gcacctgcctcctgtcaatcttccttgattgcttaaaaaaagttcatgagataaagCAGA
GCTCAAAGACAGGATCCT
Primer
(+)agagggaagaggcagactttct
(+)AGGATCCTGTCTTTGAGCTCTG


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