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Mouse element [ mm1961 ]


Position: chr13:15,007,349-15,012,349 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TAGTCTTCCTCGGAGAATCAGCaattgttctgggttagcttaagcctttggtttgtgtct
ctagcttttatcatgggttgaggaattccccataactgtatgttttacccaggatcttgg
tttaggcatgttatttccattagatgaactaaactattgaggcatggattagtctacata
cttttaaccactttcctgaacactcagcaaaatgtttagcaccaaaaaaagggtaatcag
tatatatagaccaaacacatggacagatgatgaaaaatatcagagcccaaattggcttgc
ctttgcttcaaatgatcagttttttaggaaaagaagccatgtgcacatttgattattttt
cttttaaattcttttttttattgaaatcttaatttaatgaatttataattcacaatcccc
ttgaagtgagtacctggttatgttagttagcagtgggcaggttaagagtagaaccttcat
tctcttggataaattttttcaagtttatactggtcacaaatgcttttcccccaaactatt
ccagtcatccctaccttagatccctgttactataatgtcatcctttatagtttttgaaaa
cacaaatgtcacgttcctttgaagtttatatatttcactttaattactactttttatatc
aatactgcaatttgttccttatagatatatgtacctgttttggcttttaaaaaaatcatg
aactcagttatttctgttatttagagaattagatatttggaagtttagtttatgactgga
agtattctcaacttttccttcccaccataatcagagccatccctggatttaatgttcctc
caaactagtgtccagtcatattctcacccatagctgagaggtcccaagacctgcttcttt
ggtgcacacactttgtgatgtcatttctgcaatttctcttagtacttatcattctcttta
tctatttactattccttgtctttcttccttccttgattaaactggtatttggtgacctga
caagacctagtaggagcctgcttgatatctagaaactagatgttatcaataatattaaat
gaaggttgttcatgaattcaagagaaatgtatgttacagtcactcactcgaggtagaaat
aaaagtaacctagagtcgcaggcagagatgaataaatctgcagctgttccttgagtctta
gtctcaattctgtataataaaaacaggatatattttatcatataactgaggatgaaataa
tatacaaatatttcccagaaagttagcaatgggttctttgggttcagggacaattatggc
agccccctaggaattctccaaacaggttaagtgaggacgtttttatagatagacagctga
ggtccaaaaattacaaagattgcaggatcagtagtatgacctcatgtttgctcttttatg
aagctatattgtcacacatatgtctgaaagatactgactttgtaactgcaatactactgc
tcctgacctcactggagactagtgattggaacatattaaaaacaaatgtgcttgctgtaa
aacttttgaggaaaactttttgagattgtatagttcctttttcctctgttctaaacctgc
actaatctgaatcatgagataatgttggcacaggaaaatagacaagcatttacccacctg
ccccctatgaattttctaaccaaacttccttgtatgatttcaataaaagactagagctgt
gtgaagtctataggagcaccctgaatcctgaattcaaggacttacatggcaaaaacaaac
aaacaaacaaacaaacaaacaaacagcctgccagttttgtatctccattgtgtgttttct
tatttacctaccaggtatctcttgtccttgaggaatttcaactcttgtcgaggctgtacc
ctggcacaagttgagaggcaaagctgattgtcagcaacttacagtggctgaatttttaga
ggtaaataaacataagcaagtatgtagactgaggaagaataggtcacaaaacaaaatgaa
agtagcctcccaacacaacaagaagaatttaagatttctgaggaaaccaaagaggtaaac
gagggcttctgtatgaacaaaaaaacctgtgttcgaggagaggggtgttatagatcaacc
aggggtcatttcctgagggaaacaaatgcttttaggagtgaagtcttaacttcagtccta
aggatgtcccacagccctccactcacaaatcctgcaaggagagagctggcctcccaggag
tactctcactcttaagttcagagatgagattacctcttttgctctaataactgtccaaag
tgggacccaccaggaatgaacagggcacaggaatagtagagcaactggggacaggatgct
tctggttgccatttgcactcctgacctaagggtgtttcacagccctccaggcacaaatcc
caacagaagagagctagtcccccaaggagtgctgacataccaaagatcaaaggcccacag
gttgacagaagggacagcaacagcaacagtaagactaacaaacacccgagataaccagat
ggcaagaggcaagactaagaacctaagcaacagaaataaaggctaattagcatgatcaaa
acctagttctcccaatacagcaagtcctgtaaaccacaccacatcacaaaagcaagattc
agatttaaaatcacttccaatgatgatgatagaagactttaagaaggacataaataactc
ccttaaagaaatacaggagagggctccagcactgggtcacttgggcgtgaagtcagagga
tacccccaaggtctctagaggactctccacatgatcttaggaccaccagtgagtggaaca
caacttccgttccattccaatcgcgcgcgggacctgaggcagcattagggaagcagaaaa
cccagcctgaccagggtcacaagtcccttccgattggcaccagcaccttgggcacagagt
cggtggactcccccaaggtccctaaaggacagctgctgaggcaaaccccattaccacctt
tactgccagaggagaggtgtctgccctgcccgggaggatttgttggaggacctgggggag
tcatcttggttcctggatgcctccaagactagtctgcgcaggtgagagtgtggactataa
aagctaacagcttctgggacaggcagaagcgaaacagcttctgggacaggccctgtttca
ggccttcatcttctgcaaggaggcaggtccgaacaccagatatctgtgcaccttccctgt
aagagaagagcttgcctgcagagagtgctctgaccactgaaactcaggagaaagctagtc
tcccaggtctgctgatagaggctaacagaatcacctgaggaacaagcattaaccagagac
aactataacaactaactccagagattaccaaatggcgaaaggcaaactttagaatcctac
taacagaaaccaagaccactcaccatcatcagaatgcagcactaccacctcacccagtcc
tgggcaccccaacacacccgaaaacctagacccagatttaaaagcatatctcatgatgat
ggtagaggacatcaagaaggactttaataactcacttaaagaaagacaggagaacactgc
taaagagttacaagtccttaaagaaaaaacaggaaaacacatcccaacagatgatggaaa
tgaacaaaaccatactagacctaaaaagggaagtagacacaataaagaaaacccaaagtg
aggcaaagctggagatagaaaccctaggaaagaaatctggaaccacagatgtgagcatca
gcaacagaatacaagagatggaagagagagtctcaggtgcagatgattccatagagaaca
tcggcacaaaaatcaaagaaaatgaaaaaaaaaaatcctgactcaaaacatccaggaaat
ccaggacacaatgagaagaccaaacctatggataataggagtagatgagaatgaagaatt
tcaacttaaagggccagcaaatatcttcaacaaaattatagaagaaaacttccaaaagct
aaagaaagagatgtccattaacatacaagaagcctaaagaactccaaatagactagacca
gaaaagaaattcctcctgacacataataatcagaaacacaaatacactaaataaagatag
aatattaaaagcagtaagggagaaaggtcaagtaacatataaaggcagtcctatcagaat
tacaccagacatttcaccagagactatgaaagccagaagatcctggacagatattataca
gaccctgagataacacaaatgccagcccaggctactatacccagccaaactttcaattac
catagatggagaaaacaaagtattccaggaaaaaaaccaaattcacacattatctttcca
caatctagcctttcaaaggataataacagaaaaaaccaataaaaggacagaaaccatgta
ctagataaagaaaataatccttcaacaaacctaaaagaagacagctacaagaacagaatg
ccaactctaacaacaaaaataatagaaagcaacaattacttttctttaatatctcttaat
atcaatggactcaattccccaataaaaagacatagactaacagactggctacaaaaacag
gagccaacattttgctgcttacaggaaactcatctcagggaaaaagccagatactacctc
agattgaaaggctggaaaacaagtttccaagcaaatggtctgaagaaacaagctggagta
gacattctaatatctaataaaatcgatttccaacccaaagttatcaaaaaaatacaagga
gtgatatttcatactcatcaaaggaaaaatcatccaagaggagctctcaattctgattat
ctatgctccaaatgaaagggcagccacattcattaaagaaactttagtaaagctcaaagC
AGGTATTGCACCTCACACAAT
Primer
(+)TAGTCTTCCTCGGAGAATCAGC
(+)ATTGTGTGAGGTGCAATACCTG


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