Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1960 ]


Position: chr13:65,193,403-65,200,453 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Hiatl1(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CaGGTGAAGGAATTGAACAACAttttccaggatctaaaaatggaaataaatacaataaag
aaatcacaaagggaggctaccctggagatggaaaaccaagcaaagaaatcaggagtttca
gacgcaagcatcaccaaaagaatacaagaaaaatagaaagaatctcaggcatagaagata
cccctagaaaatattgacacgggctggcgagatggctcagtggttaagagcaccgactgc
tcttccgaaggtcccgagttcaaatcccagcaaccacatggtggctcacaaacatctgta
ataaaatctgatgccctctttggagtatctgaagacagctacagtgtacttataaataaa
taaatctttaaaaaaaaaaagaaaagaaaaagaaaatattgacacaacagtcaaagaaaa
tacaaagtagaaaaaagttcctaacccaatacatccaggaaagtcaggagataatgaaaa
gaccaaacctaagaataataggtataaaatagagtgaagattccaaattcaaaaggccag
gaaacatcttcaacaaagtcatggaaggaaacttccctaacctaaagaaagacttgccca
tagggctggagagatggctcagtggttaagagcactgactgctctttcagaggttctaag
ttcaattcctagcaaccacatcgtggctcacaaccacctgtaatgggatctgatgcactc
ttctggtgtgtgtctgaagacagctacagtgtactcatataaataaaaataaataaatcc
ttaaaaaaatgacatgcccataaatgtacaaaaagtctacagaacgccaaatatctagga
ctagaaaagaaatttctcctgtcacataataatcaaaacaccaaatgctcagatcaaaag
ctgtaagggggggaaggtcaaataacatataaaggcagacctattagaattataccagac
ttcttacagaggctctaaaagccagaagaccttagacagaatcatgcagaccctaaaaga
acaatacaataaaagagtgtgagaaaccacagaaactatacaaatgcttggagacgaaac
aaaagacttgttagacacaaataaaaatgataacttttctgggatatgcctaagagggct
ctaagagaaatgtttcatagtttgtaagagcaaatattaaaaatttagatcatagagtcc
tctggaggaagccaagatgcccttcctgagcagcctgctatccagtggaacctccattct
ccctgcacctctcctttcaccttcatcagacctgtgaattctgaaccatacaggtaagct
tcctgtcttagtcagggtcttactgctgtgaacagacatcatgaccaaggcaagttttat
aaaaacaacatttaattgaggctggattacaggttcagaggttcagcccattatcatcaa
ggtgggagcatggcagtatccaggtaggcatggcgcaggaggagctgattgtgggagtgg
gtaaatgggagggggcagtgagtaagatgtaaagtacattaaaaaaaattaaaattaaaa
aataaggcaaactaaaatgcagtagacagcaagaaacaacaaaattaagataggaactaa
taaagactatctatctatctatctgtatgtatgtatgtgtgtgtgtgtgtatgtgtgtat
acatataatttaataaaaaagagtagttctttgaaaagagatataatactggcaaattct
agttaaatgaatgaaaagaaagaaagaatagacaaaaattactaagaatagagatgaaaa
ggcatgttgcaatagactataatgaactgtaaggggttttcaggaactttaaaaaattac
atttcaattagctgaaacaaatctagaaaacaaaaatgtggataaattcctaaaaacatg
taatctcccaaaattaaatcatgtgtatgggaagatacagaccatgaaaacaaaagggga
ccaagaggggtaaagagtttttaaaggagatcaaagaccaaagggctagtgaaggaagaa
aggagattaacgtaaggtactgaaggaaaaagattaatagcaacgagatatatatggaaa
acattacttttatactggctagttttaacttaacacaagctagaatcatcagaaaggagg
gagccttaactgagaaaatgcctccattaagatcaggatgtaggttaagtctataaggca
ttttcttaattaatgatttttcagggagggcccaacacattatgggtgatgctacccctg
ggctggttatccaggattctataagaaagcaggctgagcaagctatgaggtgcaagccag
gactttgtatgctgatttgaaatagttgaatgaagaactaagtaacaacaaaataaaaat
agggcccctgttaaaaggtcagaacgtcccaaagatgttaactacttggaggattttgaa
gtttataaatttggaattttggtattctttcttcagttttcagtcttcactgttctctgg
tctacacaaacacatacacgtgtgcacgcacacaaacaaaatagtaataatgaaatattc
tctaaaaattcatgccaaagtcttctataagactaactggctaatgtccaccctttaaac
ttctgtattttcaagacttaactatgagacaaaaattgaatgtatgaaaaggacctttct
gctatggcaaaataatgactaccaagagagaactattagtgcttttgtttgttttgttta
tattttgagagacaggatttctttgtacagctctggctgtcctggaactctgttgatcag
gctagccttaaactcagagtctatctgtctctgcgtccccagtggcatataccactacat
ctggcctattagttatttttttaaaataactaaaggcaactgaaacttaatttcaaagac
atttaaaacttaccctaggtgttattaaataattcttaaaatctgtaccattccacatcc
cacccctgatccctgcatctcttctttggtacttgtttgatgatttaaatcaaaacatct
tagttcttgtcaaatatatatgtggctagagagatagctcagcagttagaagcactgctg
cacttccaaagaacccaggttcaactctgagtacctacatggtaactcaaaaccacctta
atactagtttcagagaatgtgatgtgtctctcacactaggcaagtctccagaagtaggaa
tgcaagaggtacatagacatgcaaacaagtgtcatatacataaaaatttttaaaagaaac
aagtttttaaaaggaaattcaatatttgatttaaagaaatggctgtagagaagttatcaa
aaccaggcatatgtttatttttacattcatcattataaagcacttaccaattttctattt
atcaggtccttaaatcaaaacccattaacatccaaataaagaaacaatttcaacaatgtc
ttgtatttcatatataccatgtctaaaggtacagtagtacttacagtcaacattggagtt
gttaacaggccccacgcaaagaattccaagaagatgacaaaagcagcatggtaaacactt
gggtggccaaaaccttgtagctaaaaaggaaagaaagtcgttaaaaaacaataataaaca
taagaaagtatcatcaaaggcatgaagaaatatacaaactttggaccacctctattactt
aaaataaaaccacactggggaccaagatatagctatgtattggttatttttcatcattgt
gataaaagccatgaccaaaagcaacttaagaaagagtttactttagcttagagttgcaga
gtctataatggcagaaggtgcggggtagagagggaagcatgaagaaggcagctgaagcag
ctggctgagagattactgcaaagagactaccaagacaattctcatctatggtggtttgaa
tgcacttggcccatgggaagtggcactattaggaggtgtggccttgttggaggaattgca
tcactgtttcagcaggctcctagtgctcaagctcagctcagtgtggaggagagagcctct
tcctggccgcctacaaaaaacagtcttctcctggctaccttcataataagatgtagaatt
ctcagctcctccagcatcatgtctacctgcatgctgccatgcgtctcacaatgatgataa
tgaacctctgaaactgtaagccaatcgtaatcaaatgtttccccttataggagttgcctt
ggtcatgatgtcttttcacagcaattgaaaccccaagacatcactcaaaacaccactatt
ccactctctagcagccccacaggatcacagccattatcataatgctaaatacacttagtc
caactacaaaaatccagtattctttaacagtttcaacaccatttaaaagtcaaaagtcaa
agccaggagtggtggcacacctttaatcccaccactggggagacagaagcaggcagatct
ctggggttagtgttaggccaacctggtctacaaagaaagttccagggtagccagaactac
agagaaaagccctgtcttgaaaaacacacgccttttatcccagcactcgggaggcagagg
caggcagtttctgagttcgaggccagcctggtctacagagtaaggtccaggacagccagg
gctatacagagaaaccctgtctggaaaaaaataaataaaaattaaaacaaacaaacaagc
ataacaaaaattcaaagtctcctttgatactaaaggtaatttcttaactgactccttata
aaatagaaaggcaaattacacacttctaacatacaatggcatagaacatacatttcaatt
ccttccaacagagagaaacaaagcaagatgcaaactcaccaaagcaaacacaactacatc
ctatagctccatgtccattaacagaaactttagtttcaaggagtttggattagcccctct
agttttgctgcctgaaatctctctacaactggtcttaaggctccatcatctccaatagct
cagtgtctgcagtgtaactcaggcttcttgcacagcttcactcaatggcctctctgggca
tcctggcctcttacagacttcctgcagcaactccaatattactacatattgcctggcctc
agcagttctctgtagtcatggaggaagaacccaaaatgacctcactttggtatctttcat
acttccaaagccagtacagtgtggcttatactgctatattcctgctaattctactactgg
tttagaatgaacccttctttccctttgactaaattagctacaagttttgttaagttgaaa
caactgctttccaggagcaaaagaaaacaaaacaaaaaccctagggcaatggttctaaac
ttgtaggtctcaaccctttagggatggaagggatggacctaagacaatgggaaaacacag
atgtttatattatgattcataataataacaaaattatggttatggagtagcaatgaaaat
aattttatatgggctggagagatggctcagtggttaagaacactgactgctcttccaaag
gtcctgagttcaaatcccagcaaccacataccatccataatgagatctgatgtcctcttc
tggtgtgtctaaagacagctacagtgtactcagattgcagctttaaggatgagaaccact
gccctagggcctttcctttcaggaattggaagcttactgagaagtatgtgtggggtggag
gtggggtgtattgtcctcagggtacccttctcattgttccaaggagagcagaaggcctct
ccttaatggtactaatctcttaatttttactccttcagcacaaacctttgctataaagtt
aggcttcctagtgctccttttcaatttcctatccctagttcctctttacacaattacttt
ctgaaggatttctaataaatttgtgacttgtttcaatttatcatctagctccctggaatg
gaattaccctcaaaaaagtaaaatgttctgcttgttatcttctctgatccatcccaagca
gttattctgtaaaggtcagtagtataaactgaagatatgaccacttcataataaggctta
gaggaaggtggtatgagctaaagaatagctatgaagttcaatcctaataggagataaatc
ttagtagaactatcaatatatgcatgcactggctgtaaccacctggtaccacctggtctc
ttagataacttaagcacacagacaagaatttgttcaagaataaaaaatctgtttcttcta
taagacattgaccagcaaagtgtcctgaggacttatgtttgtatctctagtttgttatgt
ttctaaggggaatagtaggccttttctatggaatagagagacaaagcagctttagaagta
gcagtcaataaaggaccagtattgtcagccacatagatgcttggtcattatgcaagtgat
attaattgtgcagttgcttcttttaactctaggtttacagataaacaccattttagcaag
tcacttataaatttgtctagatataataatgtgaacaacttgatacttcctatagtatat
tacctcaaacctgtcacaccactggggattacagagacctgaccaagatgctcactaata
actgttctgtccagtgccacagagatcactgaacttctgagacagctaatgtttgtctta
aagatcattccttcagagctagagaaaggacccaaggagctgaaggggtttgcagcccca
taggaggaacaacaatatgaaccaaccagtactcccagagctccttgggactaaaccacc
aatcaaagaaaacacatggtgggacttgtggctctaggtgcatatgtagcatcaatagat
catcaatgagaggagaggccctaggtcctgtgaaggttctatgccccagtataggagaat
gccagggccaggaatgggagtgggtgagttgggggggggggggtggaataggggattttc
ggaggggaaACTGGGAAAGGGGATAACATTT
Primer
(+)CTGGTGAAGGAATTGAACAACA
(+)AAATGTTATCCCCTTTCCCAGT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.