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Mouse element [ mm1959 ]


Position: chr13:15,021,665-15,026,746 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGGACAGCCCTGTAGGTTATCAatatgtggagaggcccttggtcttgtgaaggcttgatg
caccagtgtaggggaatgccagggtagtgaggcagaagtgggtggatgggtgggtgagct
ctctcatagagcagatggaggatggaatagggtgttttggggagggaggactgggaaagg
ggataacatttgaaatgtaattaaataaaatatcctataagaaaaaaaagccaaaaaaat
gcttagtttgtctggaaaatcaaatactgtcaaaatcccctatttttgaccatttgttca
aacttatactcctgcagtttcactgattctatttagttgctagtgttcaattaattcaaa
gcattacttaaagcagtgtttcttcaatttctttatcattaattaaaacaaaaactttta
caaaaaaaaaaaaaagaaaaaagaaaagtggtttcttgggcagttttcagccatgtatcc
cttacttctattctttgtaagtgccaccttttgtgaatgatactttcaaaaaactatgag
cagctcctatctttgcacatttggtttgctgcagagtagaaagaggcagcagatacaaca
ggtagtaactaaaagattacagacaaggacaaacttaggagagggaatgagaaagcagaa
gttcccaaggttcctgagaaaggcagggagtctgctaaagaaggaatggaaatagactta
tttgcctttcagcatccaatagcagtgtgttcaaagaattagaaacacccacattcctga
gtcctggattctatttgcaaattcttctgacatttttacaaatagtagcttattattctc
ctgacttactatggacaagctgagcaatgtcttctacttcatgatataaacagaaatgag
gatactccctgtaatagtcagcacccttgtgaaatgtggagatcatcacattctcatcaa
cacaacttttccaatagaagcacttataacgatcaggcatcatcagaattatctggtgtt
aatgtcctggcctatgaagctgcattatgtaaaatgttgattcttacaaaattatggctt
ttttggaaaaggaaatatcacatagaagtttctgagatcaagaacaggaaatgagtgatt
cagcaagttggatttcccccaaagaactgtctccacagctgtagtgcatagtccaaacct
tccaaggacttgtctggtattagtcaaaagcaatcagactgagaaccacaaagaactctg
tgcagcatgatgaagggcagttggaaagatggactggactcccagaaatatgtcatccga
gtgcactgcttgaggagagactgtggtccaccatggatcgaagctgggcagggagcaagc
atcttctaccaaagttacgagaaggtatttgttctggcctgacaacttaagagatgattg
gttgtggaaactcgtgtttctaggtacctactgagaagcctttgggacatggttgggatt
agatgctcacttagaaccgattcatttattccctcctcccaccctctactcctttaaaaa
gcagtcatcaaagagccggattttggctgctcccatctaacacactcagggcggttctca
tgtgggcaactcctatggagtgccacttccaaggaaactgcaaaggcataaaattggaaa
cttggcattggaagggagaaatcatttttgagtatagcttttaagaacacatgaccatgc
ttcagcagaaaaaggaagcccttccattccctggaaatgtttctagtatttaattctcaa
tattgtcccacacagtcttctgacatacaactcatcacgatgatgtatgactaggttcct
gtagtagatcttaatatgttctttgtctccagattttccgtaccctgcctgctttcattc
tcaatcttcctaaaacatggatttccgcggtgtcacctactgctcaaaattactcacaag
tagcagccaggtttctgtttgtacctgatgactttttttctcttacttatattttgtcga
acagtatacatttctacaatggcatcaccattttcaaaagaagctggctactgtgcagga
ataaatgtgtatcatatgtgataaggtatcacttgaatttttctgttatataacactctt
gtcaaaggcccaggctgagaataagggttagtcattattacacattgtgttcctattctg
cacgcatattgcacattcacatatgcacctgtatatttcatctatattatatattactgt
gcagttccatggtgatctcatatataatgtttacttcttgattgcacaaaaacctatgtc
aaggacttgatcagtatcgcctaaatataaggcagtatatgaataaatacaataaataca
ataaagcttgtttcataatgtattgttctcattacatgaggcatagttgaattttacctg
atgtaaaacttaattatgttatgtttatcaaaatacctatgtatatttctaataaaccta
agtggaacagaggggcttattaaaacaaaactaacataaatattatttatttccagccca
aagttaaccaattacttgaactttttttaagtaatggttttatagcataaatgttacctt
ttagccatttttcagcacatggtttagtgacactgaatacactaactttgttgcaaaacc
aatgtgttttataattttatttggaattctttcacatgcttgagatattgtttcaaatgt
ttgattttgttcaatcttcttattttcttctgtaatgcatatttgcctaccctttcagcc
aaccaaactataaaacagtttctgtcaacaatatttgaacaactattttttactgaatat
catgggcagaatatttcttgatctctttgaaaatcaaatatgctccattttattacgtta
aaagaagaaatgtaaaaaaaaaataatttaccatattaatctatggataaagtttgcatt
ttttacagtcctcatgtgattaaagtcatatgccaaaagcaaagctattgtatttcctgc
tccacaactgcgttttggatggttctaaaagaaaaaaagagtcgtcagtctcagtggggt
tctctaagctatgaaagacctgaggaattagaaacaccgctatttcattgaacttatatg
ccactgggcatttgaggaattttgtttgtcatttgcccatttagggaatttttggaaact
tcatttttgtagcagagcttactgtacagcttttgtcttgggacatgttttctgtctgca
tggtttcagagagtttgtgatctcctttagtgggattctttgttttcctaaggtatactt
ttttgtagcttcttaagaagggattcatgaaagtacattatataaatcctagcatatctg
aaaattttattatcctgggtactatttttgttattgttgagtataattgcacagcggaaa
attcatccttttaacttataccattcaatttttccataattactatatattatattcatg
aaattgtgtaatcataattttctagatccagaacatttttcatttattaaaacatattta
aatgggtgcttaccttagtccttttatataagaaatcttctgtaaacattcttccaggga
aggagcacattgtcatatgtctggtactttacaaaatcgatttcttatttatgtcttgag
ttaatgaagttttagaaacttctgatgttggcctaatagagtagaaagctgggtttagaa
ggaacatgtactaccatgtctttactagctaaggtgtgcccaactgatagacatgaagat
tctatatgatgaagaagtcacagcttttagtccaatcactagggaatgattacaccaaaa
acatgagtttgttttggtgtatagtcttctttagtggggctttaagttggaaatcagtaa
atcccttaattatagaatcctacaatcgtaagtaaacaatttacctaagctatgtctaga
ttcttcactcatcaaaactgtgagacaataaattcctgttactctaaactgttgaacttg
tgaccctatgttatgatgcagtggaaaatgaatgcacctggcccatgcatcttctccttg
catgtctcttcagcacagagcatccaaccttccttcaacatcagtcagcaccaagaacag
gacttataaatacaatccaccaatatatgattataggctgtattccaactttggaaaaac
ctcactattcttcacattcctttggaaaacaatagaaagtccacaaatacagtttgggaa
aagtcagtgaatatcttcagtagatcataacagtgacatagctagcacagaaacgtgaaa
gggtctcagataccatttgctccaatcttttgtcattttcccctttgtgttttgatgtcc
caggagactgagaaagcccagctcgacagaatacgtaaagcatcagatttagaaccggaa
cggcatgtttacatcctattgaagtgctatcttcaatcttcagccatgtttttgtgttta
tgattaagtcatattctatgaaaaaaagatgtagtgaagttcaagttaattaatattgct
gtgagtaattagaagctggtagagcattggggatgggtagcatttagtgcatattgaact
ctgatatatacttccctgttcacggtcacattgtaatattagaagtaacattacttatga
gagtttcacatttgcatcttaattcccatgctggttaggtttttgtcatcccttggttgg
tggccctgcattctataaaaaagtcaggctgagcatgacaggggacctcacctcctgcct
ctaggattcgtccctgttagagttcctgtccagatctacttcaataatgaacagcaatat
ggaagtctaagccaaataaactcttttctgtcttgctttttttgtcattggagtttcacc
acagtaatagaaaccctaacaaaaacagactctaagattcttctctcccccagaccttgg
tcctgacatcatggaagcttTTGTGCAGACCTGCTTCAGTAT
Primer
(+)AGGACAGCCCTGTAGGTTATCA
(+)ATACTGAAGCAGGTCTGCACAA


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