Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1958 ]


Position: chr13:15,036,120-15,041,035 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AAAAGGGCTGATGTCCAAGTTAcagaggaggggaatgagtttcaataggtactgactact
tacatcaaggccaaggacttttaggctcacttgctatggtagtttaaataggtatggcgt
ccacattctcatgagtctgaacgtttggcccatagggagaggcactattaggaggtttgg
ccttgttgaagaccatatgaccttattggaggccttctgctgcctctatatcaagatgaa
gaactctcagctccttctgcagcatcacatctgcctgcatgccaccatagtcatgacagg
aaaataatggactaaacctctaaaactgtaagctagtcctaattaaatgttttcctttgt
aagaattgctgtggtcatggtgtcttttcacagcaattaaatccaaactaagacacattc
ccaagtgtacctttatgttgtgtgagtttaaaggcaaatgctccaatgaggacatattct
ttggagcttctgtattttggagagaacctttgtaacgatgagtcatccctacactcagaa
cttcattatttgcaacctcatcactgagatgttccagctattggacaaactgaggaagaa
tgtgctttcctgtgttatctcctctataaaaaccaagaataacagcttcatttctggatt
tgaatactttgatgacaagagattgcctttctactacaccaagatggtcatgcagattaa
aagttgtgtacatggtagaaactgtattgtgacatccaggagacaagattctggcttgaa
agtactttttcaggggagaagaccttcaggcttaagcaaagccttcaatcaaggcaaaac
attcagtcttcaagtgaacatatcttgtgatgacccaaccaactacactcacccctcaaa
cagatgagtcaatcaagggaattacattttaaaaaagtaatttctgatttaattttacta
tagtgttgatgcaacaaaataaaacaacacagtgctcacctgaaagggactaaaagatag
tctatctgaactattttgaatgaacatggcctaggaacacagattcagattgccctcaat
tccatgttctaacatggaagcagttgttttctcatttatagaaaaaaaatgaaggtcata
aatcaaggcaaattaaaaagtacatcagagaaattgttacagtaagatgaaggaagcttt
tccataggcttaagatgttacctgatactattcttagctttttggattgatgggagctag
tggtttgctgagttcacagacataaaaggcttttaatctgttagtcacaggaccctagtt
tttgacagagaggaggacaagtaatggctcaccttggggctaaagctagatcaagatagg
gtaatcagcctatatacttgtaacattccagtatctctaaagcattgcagttctaaggac
tcattcacagtggtaacagcataacacatagcttcaattcttttaagcttatggaaattt
gtgttatagcacagaatactgtcaatctgtgtgttcttgaaaagaaggtgttcttttgtt
gcatggaagtagcctatagttctgcatatgtacatccttatttagattctgtctacttgt
tttctgttgctgaggcaaaaatattatactccattatttggattaaatttttccttcaag
atgtatcagcatttgctgtacttgtctttaaattctgttacagttgaataaacaacatta
tattcatacagatatttcacatctgtttattggatagtatggcacttcttcatgaaatca
acttttctttgctgcaaagttatttgctcaaaacttactctgaaaccaacacagaaagtt
ttaccaatttttgattagcagaatataatattatttcctacctaaagtatgtgtttttaa
tgtttgtaacataactaggacttttgctttggtgtatgtgaactgtttatgtttaatgtg
cttatttataaggtttaggttgcaaccatcatcttagtgtgtcttttctttttgctccat
gacttattcattatatattatttaatttgtaactttcttcctacatatttcaccactatt
tttattttctatgtagatcaaggtttgactttgttgacatttagtgattattcctttggt
atctggtgattattgtaacatttatttatttggcctttattttcaaggataatttttttt
ttaatttcaatcctttaaaaagctattggttagtgtggacactttgccccttcttagaat
tgggaacaaaacacccatggaaggagttacagagacaaagtttggagctgagacaaaagg
atggacaatctagagactgccatatccagggatccatcccataatcagcctccaaacgct
gacaccattgcatacactagcaagattttgctgataggaccctgatatagctatctctag
tgagactatgccggggcctagcaaacacagaagtgaatgctcacagccagctattggatg
gatcacagggctcccaatggaggagctagagaaaatacccaaggagctaaagggatctgc
aaccctataggtggaacaacaatatgaactaaccagtaccccggagctcttgactctagc
tgcagatgtatcaaaagatggcctagtcggccatcactggaaagagaggcccattggact
tgcaaactttatatgccccagtacagaggaactccagggccaaaaagtgggagtgggtgg
gtaggggagtgggggggagggtatgggggacttttgggatagcatgggaaatgtaaatga
ggaaaatacctaatttaaaaaataaaaaaaaaaaagctattggtttaggctctcatcttt
tattccttgtatgctttctgacttttctttgcctcttttcctttgttgctttaaaggttt
ttctcttcaaggttgatgttgaccaacttatgtctggtgtgtcttgacgtactcttggtg
tatctttgatgaactctggatttacgatgattctaggatctgttgtacatactttacagc
attaacaaggaattagctagttttcttactcatgtttttctctgctttacctacagggac
aatatttttacttctgaaagtagagttgacttttttttatactgcattactctacttaat
gtgttgaagaaatggattatagtcattttattgtccttgacttctggactgaccacaatt
gactatttccttaagaaggtattaaaatgaaccctaaccacaaacagtttattcggtgtt
gggaattattgtgtataccttcctgtcagcaccttgtggtaccttctgcaaaattgacca
tataattggtcacaaaacaggcctctacagatacaagaaaattgaaataatctaatgcat
ctttttagatcactagggagtaacatcaaaaagatcagaaagctcacatacacatggaag
ctgaacaaggctctactcaatgacaacttggtcaaggaagaaataaagaaagaaattaaa
gaccttttagagtttagtgtaaatgaaggtacaacacacccaaacttatgagacccaatg
aaagcagtgctaagaggaaaactcatatagctctgagtgcctccagaaaataatgggaga
gatcatacactagcacttgacagcacatctgaaagctctagaacaaaaaagaagcaaata
cacccaagaggagaagattgcaggaaataatcaaactcagggctgaaatcaaccaaagaa
acaaaaagaagtatacaaagaatcaaccaaaccaggagttggttcttgagaaaatcaaca
ggatatataaacccttagccagactaaccagagggcacagagacagtatcaaattaacaa
aatcagaaatgaaaaggagacataacaacagaaaccaagggggaaaaaacaaaacaaaac
atcagatcctactacaaacgcctatactcaacacacctggaaagcctggatgaaatggac
aattttatagacagatactagggaccaagattaaatcaggatatatgaagaactcaagta
gctaaccaccataagagctaagaacacaatctaaaaatggggtatagaactaaacaaaaa
attcacaacaacgaatcttgaatggctgagaagcactgaagaagtgtgcaaagtccttag
tcttcagggaaatgaaaaccaaaatgaccctgaggttggtgtccagcggtatactttcca
gtgaagaatgctaagatcaaaaactcatgtgaaagcatatgttggtgagaatttgaagaa
aaaggaacattcttccatttctggtgggactgtaaagtgctatgacaactctggaaatca
atatggaggttcctcagaagttttgtgatagatttacctgaaggccaaggagcaacctta
gttgcccatggctgtagtctcccctccccccagcctgaaacctgcttgctcaggggtgga
gcttcctgctcattcgttctgccacgcccactgctggaccgtgccactttgctgttggtg
ccaccacgtgctcacctttctactggacctgagattattcggccggaatcgggtcccccc
tcttccttcataactagtgttgcaacaataaaatttgagctttgatcagaatgaatttgt
cttagctccgtttcttctttcgccccatctagattcctctcttacagctcaagtagcctt
ctcagtcaaaacgtttatgttgtgagctgctggcggccgcaacattttagtgccagaact
gggacctgaagaatggcagagggatgctaagagaaacactgctgctgtggagctccacag
gaaaggatcttcgtatcgggcatcggagcaacggACAGGTACACATGCTAGCGCTA
Primer
(+)AAAAGGGCTGATGTCCAAGTTA
(+)tagcgctagcatgtgtacctgt


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.