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Mouse element [ mm1956 ]


Position: chr13:15,044,536-15,049,365 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTGTTTGTGCTCACCTTTACCAgaactctggagacctctgttcatccctgtctcagggct
catccaaaatacagtcctgaaccaactgtgtccaagtgttcctgtgttgttggctgacct
cttcctctggcttcagaggcactggaggggcagccatggccttcaggcggcagccattcc
ttcagtcattccaggccctctgccacctaatggagtcttccacagaggcctgtcatctca
aaaatataagcttgagtattccaaagattgggatgccactctacagtcatgatgagttgg
ttacgtgagaccatacaagttaactaatgtccgtatgactgttttccttatttgaaagtg
agtaatgagatcatctgaggagtggttgctaagaataaaatcactgattaacatgaatga
taggactgtacagagcatgggcttaattttctgggtccagtttaaatagctgggagagtt
aaaagtaaaaccaatagaaacaacaggaatactaacaacaacaatttttaaaaaaccttc
tgggtgctgagattacaggcatgtaccaattctggctaacttttgtatgtatttataata
agtaaacaaacaaacatccctattccagttctagcagttgcatcagagagagctgtgtga
cactgcattcggcttcctttccccagatagctcaggtcttcagtcctataccaggtcagc
tggacctaagacagtgtagttgaccttcttgctgccatggcatgattctgcaacaatcct
tttcttggtaaaattgagcctgtttagagtaagccccttgttggtggactctttaggcca
gcaaacacacaagccacccttagtgaaagagaaaaggaaaaatcacattggaaaaatatg
tgccctaattggaagaaaaagccctcaactttgaagacttcacctatctccccctgaatt
tttagctctgcatattaatattgtgtggctcaagaaggtagtgaaattcagatgttttcc
caaagaagacatacatgatttttcactcttatatctgtgaggttagggggcattatagca
cagattcagcagacccagcataagaacacagaagccagagatgataatgccaaagggaca
gcatcctgaacgtatggacacattaaaatcgaggtttcatctcaactcaggccattgcac
tccctgccctacctcctgagtcttatatttgctgtgagtacagtatcatggtacaacctg
caacatcctcattgctcaacttcgaaattcaggaaaatagatattggagaagtaatggct
atgaggctacaatgtagtaatgtacagtccagggtgacctttgctctctgatgcccaaat
tcaatgttgcctattcagtgacattcagaattgcctctggtattacactatgacttagaa
taaaagccaagtcgctcccatatacaggaatttacagtggtttaggaagtagatctggct
gtggttttagagtaatgcattattcatgagaaggttagctagagcagaactccctaatta
gagccatgacttggatgtgaaagtccttgccctaagagtataaaaacctcacacctggct
tctaaggctatagctgaccttagatagagctgactttgtctcagttgttttattgcctgc
ccagttcctgccagtctttgtgtttacattcctctgttttgtgtaagagtcaaaagcatc
cggtaacctcatttgtaccttgccgatgtgtcacctaacttccctattttcttctgtata
aaaagtttgatactcaatttgacaaattacattcagattctacacaatactatgatcaaa
gtggtctgatcccagagatcactcaacttgaattgtaagtaacataataagtagtataaa
tgatcctaaagacaaaaatcgcatgattgtctcaacacatgcacaaagccctctaacaga
taggcacaccttcatgatgaaagtcttagaaagtagggttggtcagaacacaccccaaca
taataaaggtgatggataacaaactcatagccaatatattctcaaatggaaaaaattgaa
gcaatcccattaacagcaagaatgaaatagcgctgtctactcctcattttgctttttagt
atagtactaaaggcactaactgtaacagtgaggcaagaatgaaaagctaaaggtataact
tatttttctataaaggaatagaaaaataattctaaatatccctgtttgtacatgatataa
tattatgtataagatattccaacaattatatcacaaattttctagaagtaatgcacattt
atagcataatggcaggatgcaaaaatcaacttagaaaaatcagtgtctttttccatatac
caacaacacacatgctgagaaagttcatgctaatacttcaattcacaatagcttcaaaga
aaaaaaaattatctaggaaaacataatcaagaaactgaaatacctctacaatgaaaattt
aaataacttgagagattgaggaagaaaaatgaaaatggaagtatttcccatggtcatgag
ttggcagaaataatactttgaagattgtattggcacagaacagaaaagtacacaaaacga
taaaacacccaaatttgagtacacataacagcacccatctgatatttgataaagatgata
gaaacatgcactaaagacagtacctcttaaaaagatctgtgaaaaatgtttatcaacatg
tggaagaaagaagatagttagacctgtgtctttcatttgcccccaaatcaactccaaatg
tatgaagtatcccaatatgaaacctgaaactgttagagaaaagtgtaggcagaaccctac
aagacacagacagaaggaaggattttctcaatatgatttcattttcctaaaaattaaggt
caacaattgataagtggaacctcatgaaattaaaaggcttctgcgcagataagtaaacaa
tgaagtgacagtaaatctcatggagttggaatgaatctttgccagaaacatattcagtaa
aatattgaaatctataacatataaacagctcaaaagagaagagtcaagaacatttagtca
ggttggagatatgactcagtagtcaagagtaggctgctcttccagaggtcctgaattcaa
ttccccgtacttacctggcagttcacagccatctataactgtagttccaggtgatacagc
gctctcttctgatgtgcatatgtacatgcagacaaaacacccataaaaataacatgaaaa
aattttaaatctttttaaaaaacattaaatgaccaattaaagttatgcatttgaaaattg
aattctcaaactaaaagataaaaatggtcaagaactatctcaaaaggaattcattatgtt
tgatcatcagggtaatgagaagtaaaataagtttgagatatgattatacctcagtcagaa
tggctcaggttaaaaaacaaacaaacaaacaaacaaacaaacaaaaattcctagccagca
acagatgctggtgtgtatgtgggggaagaggaccctcatcatggttggttaccaccaaaa
tgtgtatgccactactttactcttagagttatcttgccattctgggttttgtggtttcta
tacatcatagctgagtaggactattggttgctacatccttgttgtagcataaaaggtagt
actcagtaagaggcgattcaggtccattgtagttcaagagtctctgggccctgtgtctga
aatacatagtgccttcagcactatgaacttatcatctacctctggggaactaccatgggt
aataacaatcacctgtatattttgggggtctcctatactactgtcaccaacaagacagaa
gagggtttctcatacctgatgttagatggcctttgactcttggatgaaacattgttaacc
cagataaaaaattcattaaatatatatctccttattgttaccccccctcctgtgtttatc
ttcctctactttccctactagagcctctccttttccgttttgcacaataagttcacttgt
tccaatctgtattgctcccctaccactcgatcctagcaatggtccgtttttactgtctgt
gtttctgcaggtacccccaagaacatcagaagatttggagctaagcacctccaatgagag
agaacatgcaccttttttctttctgtgattgtgttacttcaataagatgggttttttcta
gtttcacccatgtacctgcaaagttcatgtggtaatatgaatggaaattcactgaattgg
ctcatatattttcatgcttaatctccaattgatgagctgttttggaggactggccttgct
ggagtaggtatgtacttgctggtgtcaatggggataggctttgaggtttcaaaagccctc
aataagcccagtgtacctttctgttcttgctgcctgtgtttcaggaataaagatcccagc
gactgctccagtgctttgcctgtctacttcttactatgatgataatggactaatattctg
aaactctaagcaagcctccaattaaatgctttttttgtataagcatttcctttgccatgg
tgtcttttcactggaatataacagtaactagaacagttcatgattttatttttatttata
gcaaaatagtgttccatagtgtttatttgccatatttgcactattcatcaaataaccatc
agatgaatggttgttttcatttcctagctattgtgaatagaacatcagtgaacatagctg
agcaagtgTCTGTGGAGTGGAATGTTGAGT
Primer
(+)GTGTTTGTGCTCACCTTTACCA
(+)actcaacattccactccacaga


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