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Mouse element [ mm1955 ]


Position: chr13:15,057,864-15,062,616 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CAAGGAGCTTCCAGTGTACCAGgctgtgactttatatatttacctcctgttaaagtcatt
tccatgtccgcttcatacctaggaagactaatattttaattgttatctgcaggtttgcat
agcaatattctcccacaactggcccagttatgtttctttcttctattcctttagaggttg
ctttcagtaacatgcatttgaacacttttctctcaagtactaatggttcttaaatgatgt
tcacgtgcctctgcttgacactgctaggtgtgactcttctcaagctggctcactgtctaa
gttgtccaggacctgatgttgtatgagccttgtatttagtccaggactgggttagtgtac
atactttgggatctggccattgtaaagatgaaactggaccaagtgattccagcccacatg
tcttctagccttcacattcccatacagaccaaatgggcttttcctatagtgtttaaattt
tatttagtttaatgaagtggtaactgctgtctgtatctaaagggacatatttctagggta
atgttttatatttgaccttcctaagaaggcatcatcactctcaatgtcactcatcaatga
ctctcatagatgtggactcctcagttacagactcagttcaggcaaagtagagaagaatgc
tggagtcaagtgtcagtggcaaactctgtttcactgttggaaggaaaagtgaagaatgca
gctgccaaaatcattgatagcagacagcaggctgcagttaacccagccctaatactgagc
ttaaacaaagaacacaagatggtgtgatactggacacagcaaaattctcactttgacacc
aaaacaatcttctttttgttgcagagttttatgactgtgatgtcattgagcactgccaac
aacagaactgttatatcacagatgaaaagctcttaaactaacgagggacaccattatgcc
aagcctggtgtttgccataaaaatatgggtcactgaagtctgtggacttctgagctaaaa
cctccaaggaaaagaactgtgaatttagagttcaatttagttgttttgatctggacatct
ttatgagtagaaagaattaaattggccatatgtgaccttgtattttgaggaaatcaaatc
attcaaacaagataattttgcctcttggccaacaacttcttttctcttcaactccaaggt
tatgagtctctgcctgaatacattttactagcatttagtggattgtaattgttctattgt
ttctctggttacaaactcaaaatgtattgcagacttcagctgaaatcattttctgcttta
atccattgtgggagtgagaggcagatttcaacattcaaatctctgaagtcacagcaggca
tttccccctgcattcatttgtccatctgtctatctgttctgcccttctgactacctgata
aatattgagtatcaaatgcatataattgtggtagatggtgctaaatgaaatgtcaggaga
aaatactgttccttgccctcctggagtttttatggctggcatgaaagatgcctataaaca
ttctctctctctctctctctctctctctctctctctctctctctctctctctctctttct
ctcctttctctctattctctctcttcttcttttcttcttcttttcttcttttcttctctt
cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttccc
ttccttctttttctcttttacatctttctattccttcttttcttcccttcttccttttcc
ctccctccctctctctcttctctgtctctccactcttctacttctctctcagtaaattga
aaacttttactatttgagttagctagagcctacatgggtggctgcagcctataaatgtct
aaacaagcatccaaaactgtatacatgcttagacatccacatacatatgcaaatatattg
tgtcaaaaacacattgcaattaaaaagctgtagctgctagccatggcatgggaagtcaga
tatgggctctgggactcagtgggacttgcttgtctttgctgtctaccacatcctcatcta
caggagcacttctccaaagcacatatttctatttctccaggatcttagttttagcttcac
ctctgctcccctgttttctagagtatatatctttatgtgagacttttctaacaaaattac
ataaacaagtaacagaagctttcagagtagtaaggaagttgccatgccactttggctcac
ctttgtatatttagttaggaatggtgtgaactctgagagcatccttaaatgcctagctca
aacatgtaatatttatttggctcattttgtaagatatgaagaatatcctcaaagctgaga
cataatatagaactaacattgttataggagggcttgagcaaaatgtgtatgtcttcagga
tttcctaattggaatatctctatgaaattttatttttgactatcttgagggggtgatgca
gtattaattgttgtgaaattctgtgctttgtgtatcttcacttaggtattggtttttgca
gcaggatctaatttctcacagataaaggctatctgcttatgacaacactggaaaaatcta
acagggttagatcggaattgttctgtttaatgaatatgtgaattggcaaggtctgggctg
tacaaaaaccattaatttttctacactttaaccaaattttggcttttaagattttcacag
ccaacatgtcaaaaatcaagccatccctatatcatacctttcaactgatattttagaatt
tgatctgggttctgtaagacagctcagtagataaaagttcttgccatacaagccttagaa
cccaagtttgatctttgatacccactatctttggcaagaattgatgttgttttcttgaac
tctgcacatgctacatagaacatgtatattcacatacatatgcatacacatgtactgtct
tagtgacagaataccatgaccaaatcaacttgggaagaaaaggatttattcagtttaagc
ttaccaatcataaaatgaagtcatcacaggaactcaaacagggaaggagcccagagctag
gagctggatgagtactgtttactgacttgatcctcatagtttttacaacctacattcttg
tagaatacaggaccaccagcgcagggataacaccacctataatggggtgggtcctccacc
aataagtcgctaataaacaaaatggtttataagcttgccttacagcctgatcttatggag
gcttccttctctctgatgagtctagtatgtgaagtgtaaaactagccagtactaacttta
aaagatatttctataaaattgatctaaaatgccatgtttaggtccattatatggcttgat
gtatagttgactggtagagaatgaaggatcatgttaggggaatagataaagaaagtgaat
ttcacattttgattttacttgacatgtgagggctctcaaagaaaggatggtaatctgaga
acagtttgcctgaaagaatttcagaaattcatattgccattgaaattggtcttatgtccc
tttttgtgaccgctccatagcctcagaaatggtgttaggccttggaacttccccatgagc
tggattccactttgggcctgtcactggaccttctttttctcaggctcctctccatttcca
tccctgtaattctttcagacaggaacaattatggatcagagttttgactgtgggatggca
accacttccctcacttgatgcctgacttcctgctggaggtgggctctataagttacttct
ccctactgttggacatttcatctaaagtccctcactttgagtcctaagggtctttcacct
accaggtctctggtgcactctggaggtccatacaacctcctacctctcaagatttcctgt
ttctcttctttctgttggctctcagggcttcagtcgtttttcttcacacaataccagatc
aggctccccactcttccctactcccctacccattcactttcctcccatgtctttccaccc
cttcccaattgcgattgctttcttttccctctcaagtgggactaaggtgtcctcacttgg
gcacttcagcctgttgacctttttgagttctgtggactgtagcttgggtattctgtactt
ttcttccttccttccttccttcctatcttttttttctttcttccttccttccttcctttc
tttctttctttctttctttctttctttctttctttctgttgttgttattgttttgttaat
atccacttcttagtgagtgcattccttgcatgtccttttgggtcttgaattatattccag
ttattctttctctgaaaacaagagaaagatgtcatatagtaaataatgctgattaccaac
tcaacttatgtgcacatacatattatatgtacaggatgttttgctatatgcatttggttt
tcttgatttaacttaaaaatccaaatttttcaacttcataaataatgtgattgaagatca
ctgtgaaacactttatagagtgtgtgggttggggaacagggcagggggagagtataggtg
tcttttgggatagcatttgaaatgtaaatgaagaaaatatctaataaaattgtttagaaa
aaagaaaaaaaaggaatatatttcttttctacattcttcctaataagaaaaGAAAGGCAA
GTGAAACAATTCC
Primer
(+)caaggagcttccagtgtaccag
(+)GGAATTGTTTCACTTGCCTTTC


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