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Mouse element [ mm1953 ]


Position: chr13:15,061,958-15,067,091 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTGCTTTCTTTTCCCTCTCAAGtgggactaaggtgtcctcacttgggcacttcagcctgt
tgacctttttgagttctgtggactgtagcttgggtattctgtacttttcttccttccttc
cttccttcctatcttttttttctttcttccttccttccttcctttctttctttctttctt
tctttctttctttctttctttctgttgttgttattgttttgttaatatccacttcttagt
gagtgcattccttgcatgtccttttgggtcttgaattatattccagttattctttctctg
aaaacaagagaaagatgtcatatagtaaataatgctgattaccaactcaacttatgtgca
catacatattatatgtacaggatgttttgctatatgcatttggttttcttgatttaactt
aaaaatccaaatttttcaacttcataaataatgtgattgaagatcactgtgaaacacttt
atagagtgtgtgggttggggaacagggcagggggagagtataggtgtcttttgggatagc
atttgaaatgtaaatgaagaaaatatctaataaaattgtttagaaaaaagaaaaaaaagg
aatatatttcttttctacattcttcctaataagaaaagaaaggcaagtgaaacaattccc
accacaaattagaatttacttacaaacccaagtaaattttattcaatcaaataggatttt
tctttgacagaaatggtgtctgtgcctttttgaaaaggtgacatgcatacagagaatctg
ggcaaccagtgacctctaagagttccttaaaattgaggttttattgctctagataaagca
acttaatccacaaaaattagccttagtgtgcatatctcccgtgtcactttagtaattgac
tagtactaaatgcacatatatagctatgtccttaaaaaacaacttgagagactaccatct
tgcccattatcttgggttcaaagtccagtcaataaatattctcgagtgtctgctgcagga
aggaagtgggttaaacactttgaatgcaagagaaatgggaacacgtctttaccacaggaa
agttcaaagttcagggaagagacagattctgtggtctaggcaaggaacagagaagcagtc
atcagctagtttgactatccacccagcaattagaggtagactggaagctacatgttaaca
accacaagggacgcatcactatgaatcatttactgagacatcctactttctgccacaggt
gggtcatttatatttttcccagaagccatctgctagtctaaatgctggggtaggccaact
tacttttctgttccaaacaagaatttcactttcccagaagcaactagaatatgctcagat
ttggtttgaagccttaaacaaaaccaaaatggtgtgctttttacccccctattctatgca
aagatttttggccatttggaagttagtggaactttaaagcattcaaccttgttagaatat
ttaggttcagggtaagaaaggtatttgctgactttttgatatcttagacatagtcaagaa
aggtgtatgcacaagtctctcaaacactattaattcctctcaaacccaaaggttaattta
aaaacacttcaatggctattgaaacctaagaatagaaattatgtctgtgttcatttatgt
cctcatacaagaaaaagaaattttagcaacattaaagaaaaataaagtttgaaatgtgaa
tttccttgtggactgagccagtaccctgggcagaccttgggctctagctctgcacccagt
tctacaacacccaaaggaagctcaactcccagatgctctgacactcccaggataataggt
gaggaggccacaacatctttcataacaccaggagtaactgggaaacccaggatccaggga
tgcaggaacccccactagtcagtagcattgggttccttacagtctgagccagtgccctga
gcagaacgtgggtgctagctctgcactgaataccacaacaccaagaagctcaactcccag
gtgctctaatacttctaggatcacagaatcttaggagcttggtcacaccacgatttgagg
atcacagaagcatcctgattcccaggagttctgacatactcagatttcaggatcatagga
ctccagaatcagatgatcacagaaacagctggactttgagtagttctgatgaaaccaaga
tcacaggagggaggggctccagtcagagacagcaagggcaggtagcacaaaagataacca
aatggcaaaaggcaagcccaagaacataagcaacaaaagcaaggttacttggtgtcttag
tcagggtttctattcctgcacaaacatcatgacaaaaaagcaagttggggaggaaagggt
ttattccgcttacactccatactgctgttcatcaccaaaggaagtcaggactggaactca
agcagatcaggaagcaggagctgatgcagaagcaatggagggatgtcccttactggcttg
cttcctctggcttgctcagcctgctctcttataaaacccaagactaccagcccagagatg
gtcccacacacaaggggcctttcccccttgatcactaattgagaaaatgccttacagttg
gatctcatggaggcatttcaactgaagctcctttctctgtgataactccagctgtgtcaa
gttgacacaaaactagccagtatacttggcaacatcagaacacaattctcccaccatagc
tgattctggatatcccatcacacggaaaaagcaagatttgaatttaaaatcacttctcat
gatgatgacagaggactttaagaaggacacaaataactcccttaaagaaatgcaggagaa
cacaggtaaactggtagaagcccttaaagaggaaacacaaaaatcccttaaagaattaca
ggaataaatgatcaaaaaggtgaaggaattgaacaaaaccatccaggatataaaaatgga
aatagaaacaataaagaaatcacaaaggtagacaactctggagatagaaaatctaggaaa
gatataagaagacatagatgcaagcttcaccaaaagaatacaagagatagaaaagagaat
ctcaggtgcagaagataccataaaaaaatattgacacaacagtcaaaaaatgcaaaatgc
aaaatgctcttaacccaaaacatccaggaagtccaggacacaatgagaagaccaaacgta
aggataataggtatagaagagagtgaagattcccaaattaaacagccattaaatatcttc
aatgaaattatacaagaaaacttccctaacctaaagaaagagatgcccatgaacatacga
gaagcctacagaactccaaatacattgaatcagaaaagaaattcctcccatcacataata
gtccagataccaaatgcacaaaacaaagaaaaaatattaaaagcattaaggggaaaaggt
caagtaacatataaaggcagacctatcagaattacaccagatctctcaccagagactatg
aaagccagaaaatcctggacagatgtcacacagaccctaagagaacacaaaagccagccc
acactactatacccagcaaaattctcaattatcatagatggagaaaccaaaatattccat
gacaaaaccaaatttacacaatatctttccagagatccaaccaatccaatatatgaaggt
taacagatagaaaactccatcactaggaaggaaactataccctagaaagagcaagaaagt
aatcttctttcaaaaacaatcaaaagaagacacacacacacacaatgattccacctctaa
caacaaaattagcaggaagcaacaatggctatcccttaatatctcttaatatcaatggac
tcaattcccaaataaaaagacatagactaacagactggatacttaaacaggacccaacat
tttgctgcatacaggacacccacctcagtgacaaagacagacactacctcagagtaaaag
tctagaaaacaattttccaagaaaacagtccaaagaaacaagctagagtagtcattctaa
tattgaataaaatcgacttccaaccaacatttatcaaaaaagataagaaaggacacttca
cactcattaaaggaaaaatccaccaagatgaacttccaattctgaatatctatgttccaa
tgcaagggaatccacattgattaaagaaactatactgaatctcaaagcacacactgtacc
tcatacaataatagtaggagacttcaacattccactctcatcaatggacagatcatggaa
acagaaattaaacagagacagaatcaaattaacagaagtcatgaaccaaatggatttaat
agatattcataggacattttatcctacaaaaaaagaatataccttctcctcagcacatca
tggtaccttctcaaaaagtgaccatataatttgtcacaaaacatgcttcaacaaatataa
gaatatttaaataatcaccacagaccaaggctggtcttcactaacaacaaaaacaatgga
aagtccacatatacatggaagctgaacaacgctccacacaatgataccttggtcaaggaa
gaaataaagagattaaagactttttagcatttaaagaacatgaaggcaaaatatgccaaa
agtcattggacaaaaggaaagcaggactaataagaaacatcttagctctaagtgcctcca
aaaagaaactggagagagcatacactagtaccttgacagtacacctgaaaactctagctc
aaaaagaagcaaataaacccaaaaggagtagatagctgaaataattgaaattgggactga
aattaaccccatagaaacaaacaaactatacaaagaatcaacaaaaccaggagctggttt
tgagaaaatcaacaagaaagattaacctttagccagactaaccagagagcacagagacag
tatccaaattaacaaaagtcagaaatgaaagggaaacataacaatagaaactgaggtaat
tgaaaataccatcagatcctactacaaaagcctatactcaacaataatggaaaatatgga
taaaatagacaaATTGCCAGAAAGATTCCAGGTA
Primer
(+)TTGCTTTCTTTTCCCTCTCAAG
(+)tacctggaatctttctggcaat


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