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Mouse element [ mm1952 ]


Position: chr13:15,075,347-15,080,236 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTGGGATTTAGACAAGCCAATCacacagtcactgaaccaatgtcttaaaataaaacagaa
tacattcgtatactgatttctctgtagaaccctggatagtgtaaaaagtggacagacaga
tatctctatccagtaaaactgcagttgcaagaaagatgtaaatctccactgccctttttc
ttcctttcctcccattggctggcctctacctggttgaatacaaagctgagaagtgtctag
tgttagaagaaaatatacatgcaccagaattggaaagtgctgaggaaaccacaacgataa
aactctcaaatccacttgtcccccaaaattgcttataatttgggggaggctaggcacaaa
tgagcatgatcttaattggcatccaaatcctttgagaactatgaagagaccactatccaa
aacatagaatctagtctgaaatgtgcataccaaaacctaatatgaagaactctataaaat
ctttagctattaccctgacatgggaaccaatgtccacagaaagtgggttgaaactctcaa
acttatccatacaagttcaactctcttatgtctccaaaatagacttatatttttatggtt
ctgggagctgtttaaaacttctaaaataaaaattatatatggccattgaaaactgtagca
tgtggtaaaatgcaatcaactcagcaaagactaacctgacagagacattggaattacatg
aaaagctggaaaaaaatgtaattgtaacaatacacaaattatcaattgaaaacactgttg
aaaaaattttctgtgttgaacatttgaacaaatttataaaaataacttaattttagtttt
agaactgaaaaattattaatgaaatggcctgacagatggactcaactatagtagatttaa
ctcaaagagaagccaacagataacattcaatctggacaaaagagaacaagaaaaatggag
ataaatgaggaccatctcaggacatatcaaaaataacagaaatgatgtaatgttctcatc
aaggttaagggtgaactgatagcaaatatatatgaaaaagaataacagagaacttcccaa
attttgtaggaaattcaatcctatggattatagaagcgaagaaaagaaaaacatgaataa
gatagaagatattttattcccaaacatatgaaaaaactattgaaaaacaaaaactaaaat
attttgaaacccatccagtaaaagaacaatgataagttgcctatatagaaacaagtactc
tgtagatttctcatgagaagagccaatagcacctgtaaatgcacagatttagtaacttca
gcaaaaagtctgattaatcaaagcctttgagtaattaaagcttgcacaggaaaacagaat
aggtagtcagcatggtcttacaactctgagaagaactaattcatgtcagatactctaaat
ctaatttcctaagccaacatactttcataggtaaagtttgtgaaacgtttaaatgaaata
tgcatttcagaattttgtcagctttctcactgcaaacagaataaaagaaagtatgttcca
ggcaattttgttaagccagtaagccctgtttacaaaacagaacaaactgagttactaaac
atacatacaagatcagtttttttttcaggaacatacacatgaagttctcaataaaaaata
ttagtcttcattgtgtcctatagatttgggtatgttgttttggtttggtttggtttggtt
ttcattcaatttttgaaagtttaaattttctttcagtcctctttcatgaaccaattttca
ttgaacagtaggtcactcagtttttataccatctgcttttcttttattgtttatatatag
ctttaatccatggtgttcatatatgatacagggtattatttcaattatcttatatctgtt
gagactagttttatgttctaatatgttatcagtttgtgaaaattccagatctgctgagaa
ggaagtatactttagtgtttgggtagaatatgctgttgatgtctcttaaggtcattttat
ttgactacagtgtttctctttttagtattttcttgatgacctgtataatggatcattgaa
gtcccacgctatcactgttttagggtcactatgtgacgtttaggtttagaaacttctttt
atgaacttggatgtccctctgcctggtgcttaattgaaatatcctcttgatggatttttt
cccatctattctcattagtttaggtttgaaatatgttttgtcagctataaaaagagctac
atgtgcttgcttcttgattccatttgcttggaatacctttttccatctttttaccctaag
gtaatctgtattcttcatagtgaagtatgtttcttagatataacagaaagattaatcctg
ttttctactccaaatctgctagtagaccattaatatggagagatattaatgagcagtatt
tattaatggctattgttttgttgtggtggtggtggtccctattttgataaatatcctgag
attacatcttctgtggtatagattaaagtactccagactgaagttttctgtccagtgcct
tctgtagggctgtattggtggatagaaattggttcaatttactttttatcatagaatttt
ttattgattgattgactgctattggtaactttgctgggtataatagtcttggctggcatc
tgtgaactcttagatctagaagaacatccattcaggtcctttgtgctttctgaatcaata
ttgaaacctggtgttattctaatggatctgcacttacaaataacttagtctttttccctt
gcaactcttcctatctttcattgttctgtagtttactgttttgattattgtgtgtcttga
ggagtttagtttatgatcctcaattttgatattctatatgatttctgtacctttatgtct
ttagtgttggaaattttttctatgattttgttaaactatttcctgaacttttgccctgga
tttctcttccttactgtatttttgctattcatagatttgttattttctttatagtgtttg
agatttcatgaatatcttgtgcatgtcttttaatctattgatgaggattatctctgagct
tttgtttggcattctgagtctttcatttacaattttatttcagtttggatgatctttaat
gattctgtttcttgttaaagtctagtttcatgtcttgaatagttttctttaaacagttag
tgttttcctggtcctcattaaggcatttattcacatcctcttcaaggtctgtgtatatac
tcataaatgatattttatggtccttgtcttgtaattcagctaaattgcgtttttaaagcc
tattgtaataaggctgctggcttctggaggagacacattgtcttggttgctcatgtttct
gattttgcactagagtgtgggcatctggtgttataatatttgaagggtttctctatgttc
cattattgaatgctatttcccattcttgaacttaaccaaatgtggtggctatgtggttcc
tgagtaccagcctagtgttgtcactgggttttcctagaagagtgggttagtgggtgtaaa
caaaggaaaggaaatgacctcaaaagctgaatggggtagccagaaagaacaaggggaccc
ttgatccaccccaagaaagagaaagtcctcagtgaattaaggtgatggtgagaggagggt
ttctgctggcaggttgcaacaggactaagaataagtcttgggaagttgaactggaggaca
ggaagaataagaaaaatgacctacatctactaatattatttaaatatcagttatacacag
gggtgatcatttttaagtctccagacttaaatagaaagaaattatgataattgacaaaaa
tgtaaaaacaagtttattttggttgtatagaattttctagaaagtcccagagatcttaga
caaagtgaccagcagtggagagatagaacctgaagaaaccacctccagtagatagacaga
ggcccccagtggaaagatgggaccacccacccatcttcaacatttttgacccagaattat
tcatgtctaaaagaaataaagggacaaaaatggagcacagattgaaggaatgcagcacaa
cggattcagtgaccagctgaacttgggatccatcccatgagttgacaccaaactctgtca
ctattactgatgccatgttgtgcttgtagacaggagcctggcatgactgttctctgagag
actctaccagcagcggactaaaacagatacaaatacttactgccaaccattggactgagg
tcggggattgtatggaagagttaggggaattattgaaggagctgaacggaatagctaccc
tatagaggaaagaacaacagtaacatctaacccagacccctcagagctcccagatactaa
gacagcaaccaaagtgtatacatgggctgttcctacatgggctgttccatggcccttgac
atatgtgtagcagaggactgccttgtcttgcctcagtaagagagaatgagccaatcaatc
ctttagagacttgattctacatgaaagggggatgctgggtgtggtggcgagtgggggtga
gtaggtgagtgagggggtgggtgggtagaaggcaaagagcagggtgatgggatgaagaat
tctggaaggaggggggccaggaaagggtctaacatttggaatgtaaataaataaaataat
ttaataaattaaaacaagaattttctttctgtattgacccccctctctttgtcacagtgg
gagttccttcctgttattctgtttctctcttcaaaacatctgtatcctgctatctgttcc
caagcttcTTCTCAGCGATGATCCCTTTAT
Primer
(+)ctgggatttagacaagccaatc
(+)ATAAAGGGATCATCGCTGAGAA


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