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Mouse element [ mm1951 ]


Position: chr13:15,071,617-15,075,958 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTGCTAGAGCACCTCTCCAGTTtagtcttgacactgttttacttggcataacctcataaa
attgccaacaaaaccaaaatttacaatggcttccacatgtgtatatgtgcgattctgggt
ccagaagagtaggagttagaacaagaagaaagaaatgccatataaaacatctgagtcatt
ctgacctgtgttcatatgagtggcacatttgtcttttctccgaccatttacaggaagaac
tgccacatttcttggccagcttggatttatagcaacttttccttttgcctgtattcatga
acgccagtgttttgcttagtattttagaccatgatccacttccaaacacctacccaatgt
tagttctatagaaataacttataatcccagaacattactttctattacatatttggtttt
taaatatcaaattaaaagcatttgtgaaaacaagaccatcaaatattggtggttttaata
tttaggaataaatttctcatttgcttaagacattggatagtgcgtactgactaaggtatt
gagataaacatttgcttactgaagtttacctatgacttcttaaacttcaccacctattaa
ataaacacatggcaactcactcatcaattcatctaaccatgcactgataactatctgctt
ggaatagactttttctttgctttggttatgaatatatgtattgatcaccagttatagctg
ctgtaattcaggaaaatatcttgcttctccagggctgagaaagttatgactgctgtccaa
acgtcttgtagtcagctacagctatatcaaggagagcaaagctcattgcccccatcactt
ctattgtccttttaaatcaatatttggatgagtgtatccactaaaggtagtctaaaattt
ctgagttggtgctgtaaatgtagaagattgatccaggcaaaataaagaggtttataataa
aaatatgagagtagcttattctttaaaattacttgtgtgaaataaccctattcaaatgcg
agtgctgagtacaagaaagggttcagaaggaatcttatcctttgattttggactagtcac
aaaaaataataagggagattcgcactggggaggtaacttggctgtatatagaaaattaat
aaatacctcttaactctgaaccagaagagccaagcttgggaatcaaatcctcctgaaggt
caaccttttgcttctcatggataataggtggggcatgggtgtgtatagatactctcttag
ttctgctgctatacatttccataactattttgaatttaatcttgaattactgtgagccgc
accatttttcatcatatactttagtaactggtttattatatcccctaaatcaggaagaaa
acctctcaaacttgtttattctatctgtatcttagctataatcaagtgacatgagccagg
aggatggctgtggatggatattcctcacctctcacctcttacatctcccccttctctctt
ctatccttttcttatttccccttccctcttcattcaccagaggcttttctatttgtagat
tcaagagaagacatttaggaaacacttaataaacatattaggttctctgaacactcccaa
gaagtgttatgatgtctcttgacataacttctctgaataagggataccagagtgatcatg
atgatgtacaaaacctacactcctagtacccaccaaggatgtgcctttcttaggtcttgc
tgagacgcatctgcactccaatcaattggcatgggcttaatgctttcccttactagacta
accttaattctccttgagaacttctttctgctttaaaatccctattggttgtttgcagtt
gccaggaaagttccattccttctcttcactcaggaaattcttactcacttaaaagtcaca
cttctttaggaaaactttctgtaactttccttcagggctgtagccctagcttagagattc
tataacatggttcttctttccttctggtgctcattgtctctataatgatatacttttaga
tatgtcatcccttatttaaagtgtgttgactagaatctcctatgataaaagatactatga
ctattttgcacatcacactatcttagcattgaacagaatgtctattcaaagtcaatacta
aatgttacttgtataaaatatttttgtaacaaatattataaatggcaacaaacttataaa
attacatttcccaatagaaatacatagatcctataaatatgtaaaaataaaatagttttt
gagctggaaaatgcttattggtagcgtatgcacccctggcccaattcttagccacacaac
aataaaagcaaggaaaaaataaagtaaaaactattgctagtattcaaattaactatggta
aaaagaaacaggtaagaggtctcaattcttggtacattaaactcatcctattcaaccttt
ctttcactttctcttccttccttccttctttccttccttccctccttccttccttccttc
cttccttccttccttccttccttccttccttccttatttctttcctttctttctttcaat
ctgaacataattaacataatttacatagattataaaatctagccatgattctgagacttg
ttaaagcatctacaaaagaaaaaatagcagaaataatggggaagtatactggtgtcattg
aactttatattctctttccatcagtgtttcatagtctttccttcatacttcctccaaaca
tagaataaaacatcaggacagagagagataagagaagggagagagagagagagagagaga
gagagagagagagagagagagagagagagagagggagagagagagagagggagagagaga
gagagagagaggaagatcgacaatgaggatgataatgaagaatgaatgaacaaaagaaaa
ttgaatgttctaagagggggaccaagctatggcctaaggagcttggaaagtaaacttcta
aataacatgtgtataaattatgatcccctctcttgtaacagtccccccaaattccaaagc
agcagaaatgttaacttatagcaagaacataaaggaactgactctgtagaagtcagagtt
ctgagtgttggtatgagtttttcttttgtatttttgttgtgtgtgcacatgcattaggca
agtaagtatctttgtttatttcctctttaattaacttatataatataatgtgcatgactt
tacattgcagtagataagtggttttaacctcattacgtagtaggcaggatatttttatat
tgctttgggaaaagaatcagtacattttgtttggtatatcatgttagattgaagtataac
cttatttttgcctttatttagactttaattgtgacttaagaagatatatataagtgcctg
gtaaacaagtaatggtttgtgatgtttaattttacatatatgcttagcttagccacaata
accaggcatgtcaccatttactgtgaaagtgatttcttgggagagattaacttctaatcc
agtagagttcaaggtagcagatcatatgtgaaagtgtatgagtcatctttaatacagtta
gctgaaggctttaaaaaatacatacatggactccttgaaagcgtgttgtcatgccttccc
ccacaaaatactgctttatatttgaaatagaaattagttccttcatggatttccagcttg
tcaacctgccctgggatttagacaagccaatcacacagtcactgaaccaatgtcttaaaa
taaaacagaatacattcgtatactgatttctctgtagaaccctggatagtgtaaaaagtg
gacagacagatatctctatccagtaaaactgcagttgcaagaaagatgtaaatctccact
gccctttttcttcctttcctcccattggctggcctctacctggttgaatacaaagctgag
aagtgtctagtgttagaagaaaatatacatgcaccagaattggaaagtgctgaggaaacc
acaacgataaaactctcaaatccacttgtcccccaaaattgcttataatttgggggaggc
taggcacaaatgagcatgatcttaattggcatccaaatcctttgagaactatgaagagac
cactatccaaaacatagaatctagtctgaaatgtgcataccaaaacctaatatgaagaac
tctataaaatctttagctattaccctgacatgggaaccaatgtccacagaaagtgggttg
aaactctcaaacttatccatacaagttcaactctcttatgtctccaaaatagacttatat
TTTTATGGTTCTGGGAGCTGTT
Primer
(+)GTGCTAGAGCACCTCTCCAGTT
(+)AACAGCTCCCAGAACCATAAAA


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