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Mouse element [ mm1950 ]


Position: chr13:15,083,952-15,088,697 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ATGAGGTGCAATATGTGCTTTGagctttagtaaagtttcttttatgaatgtgggtgctct
tgcatttggagcctagatgttcagaattgagagttaatcttggtagttttttcctttgat
gagtatgaggtgtccttccttatcttttttgatgactttaggtaaaaagtcaattttatt
tgatattagaatggctactccagcttgtttcttgggaccatttacttgaaatttttttcc
agccttttactctgaggtagtgtctatctctgtcactgaggtgcatttcctgtatgtagc
aaaatgctacatcctgtttatgtattcagtctgttagtctatgtctttttattggagaat
tgagtccattgatattgagatattaaggaatactgattgttgcttcctgttaattttgtt
gttagaattggaattatggtttttgatttgcaaatatttgttgataattttgcatctata
tgttcattagagatattggcctgtagttctctttgtatctttttctggttttgatattac
actaatattgacttcataaaatgagtttggaaatgttacttctatttctgtcctgtaaaa
taatttttgaatcattggttgtacatctttaaatgattttttttagaattctactgaaaa
tccacttggacttgggatttttttaattagatattttctttacatttcaaatgctatccc
aaacattccctataccctccccccgccttgctcccctacccatccactcccacttcttgg
ccctggcatttccctgtactggggcatataaagtttgcaagacctaggggcctctcttcc
cagtgatggtcaactaggccatctgctacatatgcagctagagacatgagctttgggggt
acgggttgttcatcctgttgttccacctatcaggttacagaccccttcagctccttgagt
actttctctagctccttcattggaggccctgtgttccatccaatagatgactgaaagcat
ccacttctgtatttgccaggcactggcatagcctcacgggaaacagctatatcagggttc
tttcatcaaaatcttgctggcatatgcaatagtgcctgggttttgtggctgattatagga
tggatccccaggtggggtagtctctgaatggaccatccttttgtcttagctccaaacttt
gtctctgtaactccaaaagaagtcacttgatatgcactcactgataagtagatattagcc
cagaaatttagaatacccaagatataatttacaaaacacaagaaagtcaagaagaaggaa
gaccaacgtgtggatacttcattccttgttagaatagggaacaaaatgcccatggagttg
ggattttttactggagatattttgtatattatgttatagatccttgttatagatctgtta
aaattattgatctcaactttgcttcactttgaagagtcaatatttcttgaaatgtacacc
tttcttttaggtttgagaaatgactcaactgttaaagggtagactcaaaaccaaaaatac
aatatactttttaattttaggccttcattatgtttttaatttcattgagaactgctctga
catctccctagtcaccactaattgtgttaaacttggccttgtctctcagttaatttggca
aaggatttgttaatgttttctagattttcaaagaagaaagaattcatttcactgaatatt
tgtatgtgcttccttgtttgtttcaatttcattaatttctgctctttgttttgagtcttt
ctttccatctactgccttagagattagtttggttttgctttcccaaagtcttggggacca
tcattaaagtattaatttgaatactttgtagtattcttatgaatcttttctttcttttaa
aaatttcctgactcctcttccaagaggttccccgagttctcagggaagggcttcaaggaa
gacctcctatctagaggtgtgtgttataaggtttctttctgtctacaggctatggatctg
tgtattgcttccaatctgctacaggaagaacctctctgattatgaccaaataaggcacca
tatattagaatagcagaatgtcagtagaagtcatttttttatttttgttttagatcagta
gtatttggttttgccctaggactctgggctatctagtctctgattcttggacacccaggc
agttttgggtatgggttccaactcacggagtgggccttaagtcaaaccaggagctggttt
gttattcacacaagctttgtgccaacattgccctagaatattttgtaaggaggactgtag
tgcaaaggttttgtagctgggttgggactcacatttttctattagtagcctgcacaatac
cttctcatactaaggacactggaacatagggatggaggtactatatatgcaccaagtcta
ttctttggtacaattatccctctcttcatttaaaaaatatgttttgaaagtttttgtaag
gttgcttcaatggtcatgaattcctctagactgcttttttcatggtaagttttttttttt
ttttctatttcatttatgatgggaagttttgccaggtaacatagtctggtttggcatctg
tattctttctaaacttgaagcacattacttcaagttctattagctttggagtttctattg
agtgaccttcagttatttttaaaagtctgaaattagtatgtgactgagtctttcttttag
cttccaatcttctttccttgttctgtatatttagtgttttaagtatacaatattgcatgg
gaaatttgttttatagtaatttgtattttgtgttctgtgtgcctactatatctgaatggg
catttcttttagcattgcagtgaagatgtgtcctacacatatttttttgtttgtttgttt
gtttgtttttcgagacggggtttccctgtgtagccctggctgtcctggagctcactctgt
agaccagaatggcctcaaattcagaaatctgcctgtctctgccttccaagtgctgggatt
agaggtggatgccaccaccgcccagcagtgtcctacacatttgaactagaatttgtctat
gcccataattcaatagatttagtcttttcatggagtctcaaagtttttgcacattcctct
gatgtattttcaaatttttattattttctttaattgagtgatcttatttttccactttat
cttcgagccctgctattcaatcttctctgtgttccattctgttggtaaggttagtcagta
aatttttattacgattattaaagctttgtgactatcttcatttcagcttgggttttcttc
accatttctacctctgtattgaattaaacttttatatgctgaatttttgtcaatatttca
ttcaggtatttgcctgcttattcttggacttccatcaccccccgccccacctgccccctt
catcattaaacaactgtaggcttttacttcaattacttcattaaaatccttgaactcttt
gaacattttttgtaattgttcttttgacttctgtgtgttaggtttccttgaagttctcat
tagggaccactgctatggtattggtgatctctggaggggaaatattttcagagtttaata
ttgattgtgggacatatgcatttcatgctaggttgtagattgtgtccttcaatatgaatt
tttagcttgccttgcttgagacagggtatcaaccatcttcatttgagagcattctaaggg
ggtagagttaaaagtaacaagtctatttccagggctgcattggcagctagagagggtccc
agtgtaggtcaaaggccaggcaacttgagattcatgagtgaacaaagataaaacagtatg
ggtgaaatgagagaagtcttgtctcttaccaggagcagatggagtgaagtttcctgggaa
tcattagaaaattaatgttaaagaaaaaaaatgtaattgtctcttttaattcctcagatg
gagggatgagataagatctgtacacaagctgtgaaaatacacagcttaggctgagtgtag
agcatttctttcactgttctaattctccctaggcctaagtttagtaccttttagcctcag
tacaatcaagtcatccaagttgactgattcaaactggggtcccttggcttctaaatcatt
atacttggaaaaactgcctctaaataccacaaactgaactacactgacttcactaactgt
attaaacaaagagaattgaatggaactgaacaacctcggtgcactcaactgactgcaatg
ttcctcgttgaacttcactgtactgcctaagctcactgaactgccctccactctcactta
ttctgcactgcccttatgtatctctctttcctgtgctagtctcatgagagttgggcatat
catctccctgactcattctcttaaatctttctctgatactttgtctggtccctcaattat
acatcacattcaaacatggttgcttccttctgcgaactaattttacctttattgtttggg
attagaggtgtgtgctaggggcataactatattccacccagaggaattacaagtatatgg
tatggctgcattctagccagttcacacagacctaggtctttggatgtgatcctttgacag
agcagccgtattgctggattaaaacttctctacaaaattttaaaACACAGCATACCAAAA
GTGTGG
Primer
(+)atgaggtgcaatatgtgctttg
(+)CCACACTTTTGGTATGCTGTGT


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