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Mouse element [ mm1949 ]


Position: chr13:15,092,138-15,097,209 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GCAATATGCCACAAAGTCAAAAggcaacctacagcttggaagaaaaatatctgccaatct
gtgcctagtaggaagctaatgttagtatccagattcatgagatactttttttgtttttaa
ctaaataacaaggaaacacaaaacctgatttataatggggagtaattgaatcagatacat
caaaagaagagttagaaatgatcagcaggtataggaaaaggtggtcaacctcactagcca
tcagtgagctatagacaaatgccaccataagataacacctcataccttaaaatagttgtt
atcagtatggaaggaatgttggcacaaaaagacctggaaaaaggaaatgctcaaacactg
tttctggaaatggatatagacacaattgttataaaagcaatatggggttcctcaacaagt
taaaatagagtcaccagaggaaacaataacccctcttctgcgaatatgctcataggaaat
aaaacaacactaactcgatctcaaaggagatttttgcattttactacaacatgaatagac
atagaacacattgtgttaagtgaaattgaacaaaagagaaaagaaatcacagaattgtgt
agtcttactgttagagggatggggaagggaaagggaggataccatacagctgtatagctg
gatgctcttagaggactcccaatgatgggaatgggggtaactctcttttgtctgaacttg
ggaccctttacttcctactgggttgctatatccagccatgatatgagagtctgtgccaag
tcttattttatcttgttatgctatattctgtggctatccctgtgagtcctgcttttgttt
tattttgttttgtttgttatattttggttttgatttgttttgttttttgaagggaaacaa
aggaggagttgatttgggggagaggagaattgtggggagggagtaggaggagtatagaga
ggggaaactctgattgggaggtaacatatgagggaagaataaaagtttaaaaagtatgaa
aagagtggcatgatatagcttgaaggtacaaatgcagagcaaaagttatgaggatctagc
atatcatgaacaatatagatactatagccagatatttttctaaaattatagccctggcag
agtgtgggtagtgcttgtgagatgatgaatatgtttgtttcatagcagaagctgttttga
atcatgtaacaacaacataccataaatatgcacaataaaatgtatttttaaggaaaaaat
attgtctgattatgttcatcctagagtagtcatatttactgtaataaaaagtctaagtgt
agtgtcaggggctgagtatgaggtagaaatccagagttagatagagaccaagttcatttt
ggaaaacaaaagcattcccagagtgaatgctgggtcactcaacggtgttcacttgctaac
tacagaatgcatatttaggtagatggactgataaatgttttgctatacacatcttgacat
aattaaacttcataaagtcattcaaatatagattatattttagaaaaaatagctttcctt
gactgtcaatgaaatcatgagtaaatgcatttaataactacttcattattaaagtcctca
ttatgtggtcatcttgtatctttcatcaagactccaaacttctagaagacagggatgatc
ttaaactccgtgtgtatgttccctgttccttagcacaatgtatgccgaaaactcctgtca
agggaaatcattatgtggtggtcccttctacagtgaggacaatcaagttagcagtgccaa
taatcccatatgaacctttcccaaattttggattaaaaatccaaacttaatcttctgatt
ttgagtttaaggagatgtctaggaagcaagagtaatgtaccagtagtagacatgagtttg
ctgtgtctcttcctgtttgagaggctcatttgtaaaatagttcttccatgaaggtaaggc
gtgggtcatatactcatgtattgctcaagtattgctaattcacctccttcaagttctctg
aaggtttattttctccatggaattaacttaaaatacctattcatgcataataaatagctt
tacttttagctctgcctggattatatacagtgacttgagtgctgagtgttgattgtcttg
ttctgtggtattaggcaagtcatgccttatgtcatctatccttaaatgacacctgggctc
ttgtcatgctcctgagatcatgcttctgaaacaaagtaaagaaatttctttaaaatcatt
ttatcctttcttggcaacctactgctattgcatttttcccttcataaacatgtctattgg
attcgagacaattctgcatcagtttggagccctaaacattctttcaccccagttgcaatc
atgaagatagtcatgttttttgtagatgtttcgtttctcacaaaggatttgattgaacct
agagatatggtttcagcgatgagggatagcatttgtgctgccatgtagaacaggagtttg
tgtattcccagacactgatgaagaactggagaacgttactcatatgaggccagtagcaga
ttctgggcaaattggtagggatcattgtaagatctgaatcacgactattatcttaagatt
ctgagtgtctcaatgaagttggttgaactggcaaaaatgtctgttctcgcttctgcacac
caccagagagctataaaactgatgcgagtggaaaattcaactctagcagaaattacaact
ctgaagccaacatttccaagtaaactgagaaccgaccagaatgtttaaaaaaaataaatg
accacaaaccatataaaatattcagaccttagtaaaaagaaaaatactcccaggactcca
aaagtttgatttattaaagtccctggttcttgcaaatgcataaaattgcacaattgctca
tagagaatcagtcctcactgcattttgtaccatgtagaagctttaaagaaaaactatatt
tatgtatggggcctatgagcactatgatttattaggtaatttcccccatgtgtaaagctc
tgtgagccccaggcccggagcggaacccaaagcaggagaaatcaacatgtaggtagcacg
tggtggggaaagtgtccagcttcaagggaagattgcaatttgacagaaacaagacaaact
atgaaggctgagaatcttaaaaaaaaaaaaaaaaagaaaatgttccctttgtagtccatc
aagtgaagcaggaagatttgtcgagaggaaagccatttgatccacacctaactatgttcc
tcccactcctcttccaagaagacagaggtagccattcagtgggctggcataaacagtgta
gacattgtgatcttactgaatgtatccagcgtgtgagctagaagctcatcctccttgggc
tacattccttagggggtaattcagtcgtgcttaaccacaggattaaattttgctccacac
tgcaagaatcattctactctggagatgtaaaggcagcgaagacaggaatcagtcaaaatc
ctcaagtcatgtctgttcctgagggaaattggtccttcagtcggaaatcacccaaacctc
tacatctacaacctggatgcttgggatattcaacattctttaaggaaagctccttccaac
cgatgactaggagctagatacagccagtggcgcttgttcttacaagcagacacatagttc
acaaggaatctcgccactttgcatagtttcttttcatgggatgatcccatagctagactt
aatgtaaggttatagtgaaatgcttaactagaaatccatatgtgaaaatccaagtttttc
ttgaaccatacaggttttatgtcccagttaactcattgcaaacttaaatagagtaagttt
ttaaaaatacatttaataatcaccaactgaatataagagcttaaagcagtctagtctaaa
tgtactcaaaaccccaaaccagtttccactgaagtgctggctttctgctgagtactgcag
tgagttaaacagcataaaggccctactggcacacatttgtagcctttcaagccaaatctc
ctttgtggagctatccaagccgagcaccgctattaagaatatacttgcatatacgtacat
gtatgaatctgcagatggatagcctattctgtctcctgtgagaatgctcatggcatatgt
agcttagtttaggtttcaatgttgctatccatctgcagggagctggcgatgctccccaca
agcctgacctggagaagctcccacttgtgcttcccttaagagaaggaatggctttacttt
ctttttttttttttacattttttccattttttattaggtatttagctcatttacatttcc
aatgctataccgaaagtcccccatacccacccacccccactccccctttttggccctggc
gttcccctgtactggggcatataaagtttgcgtgtccaatgggcctctctttccagtgat
ggccgactaggccatcttttgatacatatgcagctagagtcaagagctccggggtactgg
ttagttcataatgttgttccacctatagggttgcagatctctttagctccctgggtactt
tctctagctcctccattgggagccctgtgatccatccattagctgactgtgagcatccac
ttctgtgtttgctaggccccggcatagtctcacaagagacagctacatctgggtcctttc
aataaaatcttgctagtgtatgcaatggtgtcagcgtttggatgctgattatggggtgga
tccctggatatggcagtctctacatggtccatcctttcatctcagctccaaactttgtct
ctgtaactccttccaagggtattttgtccccacttctaaggaggggcatagtgtccacgc
ttcagtcttcatttttcttgagtttcatgtgtttagcaaattgtatcttatatcttgggt
atcctaggttttgggctaatatccacttatcagtgagtacatattgtgtgagttcctttg
tgaatgtgttACCTCACTCAGGATGATGACCT
Primer
(+)gcaatatgccacaaagtcaaaa
(+)AGGTCATCATCCTGAGTGAGGT


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