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Mouse element [ mm1948 ]


Position: chr13:15,088,377-15,092,591 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GAGAGTTGGGCATATCATCTCCctgactcattctcttaaatctttctctgatactttgtc
tggtccctcaattatacatcacattcaaacatggttgcttccttctgcgaactaatttta
cctttattgtttgggattagaggtgtgtgctaggggcataactatattccacccagagga
attacaagtatatggtatggctgcattctagccagttcacacagacctaggtctttggat
gtgatcctttgacagagcagccgtattgctggattaaaacttctctacaaaattttaaaa
cacagcataccaaaagtgtggagttcattttggcccacagtttgacatacaatacgtcat
ggaagaagcataagacagctgatcatgatgtaatttctctagggcagaaagcacagatta
actaatcctgttgtttagccccctttctctattcagtctaggacccaagcctatgaaatg
ataattggccaaatttagggtgagtcttaccacataaaataacctagttagatatctcat
atagccacgctcaggggatcatttccgagatgattctacatcctatcaattttttattaa
atattaaccatcagtattttatagtaataaatgctttactctataaaggataatatggca
ctggagagttagcccatgttactcttccagggtaagttcccagtacccttggcagctcac
tctgtaacaaacaaacaacaatgatatatatgaatatatacatgtgttcataaacataac
ataatttaaaaataaaatttaaaaaggaataaagtttcctaataaatagcttaatgctat
gccttagagagtaataaaaataaagtacaaacacaaagtcagccatagggaagtaataaa
aatacaagcattaaaaaataagtaaaagtcaataaacacttgcaaaatattacaaaattt
atgtatgaaatcagaaatcaatatattcataattatataacctatatattaatattgtaa
agacctcagaagtaaacaggatgataaagtttagtttgtcaccacattaataattatgtg
gcaacatgtttcatagcttgcatgatgtgggaaacttcctagaaatgtaacataccaaaa
tgtaattatgaacatatcaaaactagtttgaagtattcatttaagacccataggggaaaa
aaacaaaaaacaaaacaaacaaacaaacaaacaaaaacccatagaaatacaagggtcaaa
accagagcgcaacaaagctgaattcttcttaactttcaaggaagaattaataccagtact
tctcaagaccttccagtaaacagaagtagaaggaacactatactccctaacatatttcat
gaacctaggaccacctttatcaaaataccgaagatactacagaaaaaaaaaaaagacaca
gctcaatatctgtgacaattgaagaaatatagaaattttgctggattaaattgtaaagca
tattacaatgattgtacactatggagaagtgacatttatacctggtacatgagtctggct
ttgcaaatgcaaatcaataaacatgataaataacatagtgagacaaaagccttactatgg
catgagtgtaactctaatattttcaaagcctatttttttatttttatattttatttacta
ctgtgtgatcatatatttaaaacagaaaattaacttctttctaagtccatattttatatg
tctttttctaacattatcctttcttttattaattggttattttatttatttatttattta
tttatttatttatttatttatttatgttgtacccctcagcaaaccttccatcccattccc
tctctcctttacctctaagagggtgccccccatccactcccaccttagctctctaacatc
tccctatgctggggcaacaagcctccataggaccataggcctcccctcccatggatgcca
aataaggcaatcctctgttaccatgtatgtaccttgagccacggacccatccacatatac
actttggttggtggtttaatcttgagagatctaggggatctggtgagttaatattgttgt
tcttcctatggggttataatcccccttagctctttcagtccttcccctaactcttccatt
gtgatcccctggctcagtttgatggttgtctgtatctgcatctgtcttagtgagatgcta
atgaagcctctcagaggacagccatactaggtcaaagctttaacctcccttttagcccac
cacccaccagagttagtgggaaagaaagaatacaggggaagtggacctgtttagaaatgg
ttctatggagcaaatcccatctgtgttgtctggaaataggcagttcagttcacaggctaa
cagtagcagttcaattcacttgcaaacacttcactgatacaccagcagtccagttcaata
gagtctaaataagcaaacatgaatcagcagcggtggcactacctagaagagatagcaagg
cctcagtctctgcataagacaacagcagggaccaaggccaacaggaacacattgaagcaa
agatcagctaagataggagaccaaaaagtgtttacctatgcaagcaagccaagctcatcc
tctgtccatgttggtcaagtccttcaagtcttttttatactccctccaaacatcacatgt
cctccctgggtcctgcctcaccataggtcttgcctcacatgtgagtctgtctcaacagac
atcactctgccaatcagctccagtctgaggaaacggcaagaagccgcagcacaccactag
atggtgcatttctctctatagggtcccaaaaatagagctaaactatgcaatataaggtgg
accaatacgtgtgtgttgttattaaagaatcctttgctgtgttccttttatgtgcttgct
ttagcagaacgtcctttcacctgtgtctgcttcatcaaaacattcattcatgtgtttgcc
ttagcaaaacaccatccaacacaattgacttttcaaagaacccttaagtttccacttcac
gtgggcatttcaattactcgcaaccccatcccccagtagagaaagctcagcatcagatct
ttaaaaaaaataaataaataaataaaaaaaaaaaagacaacactgccaagcatggtggta
tgtgtccttattcccaatgtttgggagatagaggaaagttgtctctaaattcaaggccag
ccagggctacttgttacaaacttgtctgagcttcagagatggctcagatattaagataac
ttgttgtttctacaagagacatagatttagtttctatggcaaaagaattatctctttgat
aaatagttctatgaaaaagaaaattgggtccatatacaagtgtgtgtgtgtgtgtgaggg
agagagagagagagagagagggagagagagagagagaaagagagagagagagagagagag
agagagagagagagagagagaaagagagaatgtgtgtgtatatttatatagttagggtta
gggttagggttagggttagggttagggttagggttagggtataggttatagtatatacat
taaaatggatttaaaacccttgaacattaatgataaattctataaaacccacataaagaa
atatataatggaaactccttggcaatatttcttaaatactataccaaaattagaggcttc
aaaagtaaaaataagcaaatgggattacatcaaggtacacagcaatatgccacaaagtca
aaaggcaacctacagcttggaagaaaaatatctgccaatctgtgcctagtaggaagctaa
tgttagtatccagattcatgagatactttttttgtttttaactaaataacaaggaaacac
aaaacctgatttataatggggagtaattgaatcagatacatcaaaagaagagttagaaat
gatcagcaggtataggaaaaggtggtcaacctcactagccatcagtgagctatagacaaa
tgccaccataagataacacctcataccttaaaatagttgttatcagtatggaaggaatgt
tggcacaaaaagacctggaaaaaggaaatgctcaaacactgtttctggaaatggatatag
acacaattgttataaaagcaatatggggttcctcaacaagttaaaatagagtcACCAGAG
GAAACAATAACCCCT
Primer
(+)GAGAGTTGGGCATATCATCTCC
(+)AGGGGTTATTGTTTCCTCTGGT


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