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Mouse element [ mm1947 ]


Position: chr13:15,100,987-15,105,889 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

Reproducible staining in ear-associated structure.

Expression Pattern
hindbrain (rhombencephalon) (7 out of 8 embryos) 
other (6 out of 8 embryos) 

Embryo 1

Embryo 5

Embryo 7

Embryo 8

Embryo 9

Fasta sequence
TTGCTTGGAATAGGAAGGTGTTctctagcagttgaaacagacatctctttcacactatct
gtcaggtcatgttaattaactggatgagcctcaaatactaaacccacaatgacttatctc
ttattcttcctggacaaatacccatccattagtgttgccaggggcctctgatctccagag
ttattttaagtagccaccatctagatcttagaaacagagatatcctgtataaagagagct
ctggaatgacttccaatgaaatgcttagccctaaaccaatccacaagaaacattggccaa
aaagagtcacattaattagaaggtacaatgttactatgcaccagaaatatctgtaaaatc
atgttaagcatgagcatatgtgtagctgtacacctacacaaattattctgggcccggtct
tcatttttccctagtataagtcagtacatcaattctgaaaacacttagactatagcatgt
gatattattttgtctccttctacctctttgtcatcagacataattttaggttaaatatat
agaccatttgaactgttatcatcaaactagatattatctatagttacctttgaccttaag
ttttcataagccagataacagacaactcactatagtagttatacttgtttgaagatttgt
gtcctataatagcaattatatgtggtcaaccactatctgaaaatattcataaaaataagt
tttttagaaaacttattcatatattttcttttgtatggcatcatgagtaacataatgaat
tctcatatgtcctgctccattctaacaaacatgtgactcttcctttttttcattttatct
gttttggatacatctcttaagattagtcacttagtatatatttcaatgataatattggtt
gttaacgtagtggagcacttgcattatatcccagcaaccatttgtacagtagcctatgct
atgtcaattaacccattttatcttattagatatgtactaaatcatcccactttattacaa
gaaagaacttctgagtaagaacgtgttcacacagctttattataatatactgctaaaatt
ttcattttgttattatatactgatctgttttgtctatagtttatagtttacaaactgaac
tttaaaatatagatgcatagaaagcactttacatatagggttcagaacaatttgcttctt
tcaagtatctacaggatcttaaaatatatgcctggaagataaaagagctgtcgtagttat
caatccattgagaatctctgttttcgtattcattaatagaaaatttttgttgtgaaatta
tagcacaacagaagaatcattcattgaaaaattcttccttcccacaaaatctacaaaaat
ggctctgctgcctaattaggaaaagaaaagcttttaaaaaattaattttaatagctgtca
atttgataaatacttttggatatggtgtgaggattttacacctattttgaaaaaaaaaat
gccatcataataaagtaagatcatgtctaaatttatcttcagtgaaaattgtggaaggcc
tacagcaagtgccttatggtattgttttggattcttacctttaagaatatttaattgtga
tatactacttctatgacaaaaatacattaaataaaagtttaggtgcaccaatgtggaagc
tttcttacttaccaaataaaagtgagctcagagctcttgaatagatagggaaagggaagt
gggctgcttccagttgagggaggggataagcctcagaggggttcattagttcatctctcg
ctcccttcttgatggtttctgggaaacttcagaaatcttcaggattctgtacaacacaaa
caattttttttataaaatttcaagactttagcaaggggaaaaacacagaaaagtgggctg
gggtggcacagaaaatgactgcacagcaacatgcacagaagcaaatagatgggctttggg
gctttcatatttgttttatcttggatgatctatgagtctgaaacaggacttgccaactat
aaacatggctccttgatctgcacttaataattgtacctgtaagtgtacaggcagaatgct
gtgaaaaattcatttccctgaactttgcaatgagctgagaaaagacagaataaaagtgcc
gcaggctgtataaagtccatgcgaatatttataaatgcatggtaataaattattcttgat
tttcattgtcttatgagtagtatattactctgagtttatttaagacattaacttaacatc
acaaaaatagatacatgtgctttcccttgaatttgcagtgttttattctcctagaattgt
tcattaaaataaaaaataagaatgggaatgatattttattcatgtaaaaaaaataataat
tgtacctgtgcttaggagtgagaaaggcattatatctgaggtgttatagaataaaaatag
aagtcatacttacttcctacctctgatgaatttgtacatagttgaaagaaggaaaaacaa
cttttctaaatgtattgttcacccatttttcatccagcattcacttactcaacaaagtgt
ttattagcgtttcttagatgtactattggggctttgttatgtcttttttgattcttctgt
attttgtccgacctcacagtttccttttctgtttcttattttaatctcctccttttcctt
cttcccctttaccactaccaccatctaaaacagccttgcaaactaattaaaacctggaat
ttcttttagcatgaaaaatagtcttttattatatattggtggtaaggaagtaaaatgaaa
atgaacacttagaagtcaggttatatctttatgagtgactgagcttcattaaaatacaat
tatcaatccatcatcaaatatatgtgactaataaagtcattcctgttttgaatagctgta
gtgagtgtgaaaggaagagtaagatgaagacataaagaagtccttggtcaaagaaaggct
tagggaaagctactatatagaagaagaagaaaagcccagagctgcagaagtcattagttt
tgcccagaacaaactggaagcattgcacagcagtgtctgtgcagtacagctgcagaacaa
aggcatttctgcaagaatgatggatgggctcacatgacttatggagacttaacaaaacag
cagcacaagctgacttcccacaacagggtcttgtcccctgaggattcaaggaacttgaaa
ttcaatgaggaaaaacaaatcctcaaccagagatgataaggaaatgagactgagactctc
aaagacatgccagaatttatgcatactgatcctctggcctttggaggccttagcaaacct
cagtcactcatgattcccaaaatacttgtgggaactcttccacctgccctctaaggatca
ctatgcagtattttcagaaggtttgtttgaaatgactgtccagctcttgtcctcctctcc
tccactgctgccattcaaaatcccacacatctttctagccttaatttaagtatcacagat
aatctctcccaattcaaaatgtctatagagctgtttctcagctcggttatagcattaata
tattctactttagtcactggtcaacatattttctatatgtgtggatctgagagaggtggg
cagggtgacagggctagagaacatgcatttaaagacaaaccaataattaagcttaagcca
tggtggcacaaggctgtgtttccagctttcagaagactgaggcatgagaaccttgaattc
aaggccagagtgggacacatactaagatcctggcctaaaacaaaagtattcgcagtaata
aaaggaaatgagcaaagaaattttaggctaggattattttgtttcagcatatattgataa
gaatgtgaagtatacatatcatattcaaagttctatagaaaataaagaaacctattttac
tctcactatctctgagtagagaacagaattttttttttgtgtctagcatgaattttcttt
actgtacatttttctcatccacaggcaggccagagtagtaggtgaaaaaggagtggtcca
acagaatctaaggatggctcattaatttactccgactaatgtggacacagagattggtct
aggaaatagtaggtatctcagatctaatcagctctttatcttacatctcaccatatagaa
ttaggtgagaagcatttggggttataaggctagcataaggctattagtgtgtgtctgcta
caggggaaaaaataagtagccagacagagacagtctaaagagatagaggagacagatttc
ttaaattaccattctaaccccaaagttatggctgcttgggttgtttcatattgatttttg
aatcttttatttttgtagttttggagaataaaatcagaattgatctaacagctgagggac
atacacatgtgcttaagtctttatttgtatgatatatactaatatcattttcattgactc
agatttaaattagtttctatcacttaaagtcaagtatccttgctcagtgaacattattga
aagccattagtattttttaaacctggagagaacaatcttaaggagaaacagaatcaagta
acaagtgacgtcatttcattctcacagatgatcttgctttataaaactaagtcttgtatc
ttcatctcaaaaagatagttcttgtctgtgtttaaggagaaaagagaggatcacagagga
tgatgtacttccacttagatatttgtaaacgtgatttcaactttcaaactaaaacacaag
agaaatgtggatacaaagaggctgaacaacatcccagttagagtcacatctcagcagtga
catgtgtaaaggtaataagagGTCAAGAGGAAACACACCTTCC
Primer
(+)ttgcttggaataggaaggtgtt
(+)GGAAGGTGTGTTTCCTCTTGAC


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