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Human element [ hs1947 ]


Position: chr7:2,651,286-2,654,820 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: IQCE - TTYH3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGCCTGTTCTCTCCCAGTCActcagggatggggccacccaaagtgcaggacccgccccac
cctgcggttcgaagcctggcccctgtctccacttagcttctgtttctgcagtgggtggaa
gcgagtcagcggggggcctggcttgtgtacgtgttttccttatttggtctgtgggttgcc
aagtccatttttttttccactgaactggctggtaacttgatggactgtgtaactgacaca
ggccctctttagacccctgccttcaccccacccgcccgggtccactccctggggcgctgt
cccaagccatccctgcttgccagctcaaagcttcaggtcctaggagccagtccacctcga
aagccctgagaaagtgagacacctgcacattcgctgggggagaccctccgttctcttgtg
gcagctgctcccacttgttaaaccaagctgtttctgcgggacgtgctcactcttgggaac
cagtggcctagagctttgggttacaggcatggagagggctttcctgcctcaggcttggag
gccaatgttccatacataaaccgccatgtcctctggtgcagctgggctgctcttttaaaa
gccagcatccatcttgaagctcgctgggtaaatggcaatgcattctcaagccagtgtctt
cagctgatgcccagtgtccagtgctggtcaccagtcccctttgctgggtacagcctgcct
ggctgttctgtggtcctggaacgctgcagtgtggttttgttccatggagacagtaccaag
cggagaggcctccttgcccacggccccagggcctgggggccaggggttctggccctgcgg
ggacttaggcaggaggggaagagaagcccatggagccatgggaggggtgagctgtgggcg
gggcctagtcatgggaggggtgagctgtgggcggggcgagctgtgggtggggcctagcca
tgggagaggtgagctgtgaatggggctagctatgggtggggtgagctgtggacagggcct
agccatgggaaaggtgagctgtgggcggggcctagtcacgggagaggtgagctgtgggcg
gggcctagtcatgggaggggtgagctgtggatggggcctagccatgggaggggtgagctg
tgagtggggctgagccatgggagcagcaagctggtggagtgggctgggcggagctgtggg
ggctgctggcagggcctaggaaagtagacaactcccgggggagacgaagtagagagtgag
tccccaagaaagggactcctgccccagcgtcaagtgccaaagcaggccccatctaccact
tcagggtcgacgttggtggcaggtgttgttcacggtgtactgattgtcactgcaacacct
ccacatcaccttgaacttcaagaacagcagcaaagctgtatctgctatcagaggctgtta
ggtagtccagctttaaaataacacactctttctctatcccatgccctttaaacaagcagc
cacaggagatgtcagtctccagggcctggccccactgtgttgacagcagtcacgtctgtt
gagctgacactgctgaggctgaagctggccccgtgcaggtggctggtgagccacaggtgc
agtacccggaggtgtgctctcccctagaggcctgtccccaactcctcccctagaggccta
ttcccgctgctcacagacctcagcagaggcaccagctggagggctccagggacatccttg
gagatacaggaggctttcctggcacagggcacagctcttaggaggcctttgtaggacgct
gtctccccagcgtgtcctgctcatccaggatggggagaaagaggaggaggccccaggctc
agaagccagggacagactgccgacgattaccaaactgaatccaggcagtgccatgaccct
gggtgtcccttggttcacatcacccaccagacagctgcggagagagtgcagggaggggct
gggaccaaacaggccagaaaccagcagaaaagaggcagaagtgaggtgggtgtgcctggg
gcacgaagccagcgccggggggatttcagtggagccttacagccaggctccgtgcggact
gtgatgccagagaggcgtgcagcctctgggcaagtcgggagagggcttgggtggtcccca
caaggcagaagaggtggaagggccagagaagaccaccaagaccaccgttcccgcaggcct
ggggtgagtgacctgactgagactagcgggcagagccaagcagggctaaactccaaccca
gggcccggtgttggacaaagtagctttttctttgctcgtttgtctgtgtattaagaagag
actaaaatagccaaacgacgctggtcgcatgcgctggctgtggtctgtctgctgaatgtc
tatttttgtctcctgacgagacgtgaggaccatgcccttgatccctccgatggaccagaa
acccccttccttgcaaaaaaaaggcaattgaattaggaaaagatagcccaacctagctca
gatccaccaagataagcacagcaaagcttggctgcatttttgaggaataaaaacctgcag
aaagcaccgataaccttcaagatctgaatgagattctattataacccgtctaaacgattg
caaaattcctcctttggttttggaagcagcgtttgctctcccgtggctcggattctctga
ggaccagggagttgacacacaaaccccgccatgggtccgagccagctatttctcaaggct
cccacctcgccaagctcccaagggcctgctggcagtgcctacgctgtgccaactaccctg
tctggtacagaccacggctgggtaagcacccttaaaagcaacagaaatgacgtctggaag
ctgaaatgtgaaactgtcaagatggcttaggagaggaaggagtggacccgctggtctttg
gcattttgtatttagaattattctaactttatacataatgtataggccgatcttttggaa
gggataaggttttcattcttgtgcaactcattattctcattattggccttttaaataaaa
agttgttttgcagtgtgccttgagtgccccgtgaagacttctctttaatgacctccaggt
gtgttcctgccccacgcactcgggctgaacaaacgatccgcttcagaaaccccgcttctc
tgggcttctggcattttgccgtggtcgtaatgcaggcttggggttggagagccagctgga
gggacgggtcccgccgccagctccctgccacgcatgaactcggatacatctgttgacacc
ccggtcccccgtcgaatatctattccttagatatgaggacacaaaaatgtgcgtgcgtga
gggagttatttctccatatttgatttcatttttgtttcaggagcagggaaagaataattt
actgaggaatcaaacacagatggaaacgaccaaaaggagctgatatctgggttttgtttt
ccaatattttgttgcatagaacaaggagcatCTGTGGCTTTGTGTGCTTGTGGct
Primer
(+)AGCCTGTTCTCTCCCAGTCA
(+)caccACAAGCACACAAAGCCACAG


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