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Mouse element [ mm1946 ]


Position: chr13:15,105,051-15,109,955 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AAAAAGGAGTGGTCCAACAGAAtctaaggatggctcattaatttactccgactaatgtgg
acacagagattggtctaggaaatagtaggtatctcagatctaatcagctctttatcttac
atctcaccatatagaattaggtgagaagcatttggggttataaggctagcataaggctat
tagtgtgtgtctgctacaggggaaaaaataagtagccagacagagacagtctaaagagat
agaggagacagatttcttaaattaccattctaaccccaaagttatggctgcttgggttgt
ttcatattgatttttgaatcttttatttttgtagttttggagaataaaatcagaattgat
ctaacagctgagggacatacacatgtgcttaagtctttatttgtatgatatatactaata
tcattttcattgactcagatttaaattagtttctatcacttaaagtcaagtatccttgct
cagtgaacattattgaaagccattagtattttttaaacctggagagaacaatcttaagga
gaaacagaatcaagtaacaagtgacgtcatttcattctcacagatgatcttgctttataa
aactaagtcttgtatcttcatctcaaaaagatagttcttgtctgtgtttaaggagaaaag
agaggatcacagaggatgatgtacttccacttagatatttgtaaacgtgatttcaacttt
caaactaaaacacaagagaaatgtggatacaaagaggctgaacaacatcccagttagagt
cacatctcagcagtgacatgtgtaaaggtaataagaggtcaagaggaaacacaccttcct
tctttcttatccctgaatccttatgagaaaagagtcatgaataatttactccttgtgctg
taataattgcatcgcctacaaaaaggatgaacttttggtgaccagctatctaaaactgca
aaataccaaccatagtctaacaggaaggggctggttacctagacttggatgagagaatat
actgctatgtttgggaaggtttttgtgaaccttatattctgttaaagcacgtaaaaatca
taaaagactatctcagaatcaacttccctgcaaagactaagtgaactatataaaaaaaaa
tttagaaacaaattcagagaaattgcattacagaatccacttacaaaatttaatagtttt
tctatataccaatcagataaactcagagaaaaagatcatgggcatattccactcacaata
aactaaaagaaaattaaatatttaggaataaacctaatcaagcaggtaaaagacctccac
aatgaatactttgaatctctgaagtatcttacaaagcagagctattgggacagacttttt
atttaccctggaagcaaggccaaaaattcacaggtgtgactatagaatacgaaagagctt
ctgcacagctgaaggaagaacagtcatctcagtgaagaggaggcacacagagtggaaagg
aagccttgccagttacacatcagacagaaaactaatatccagaatatttaaacaactaca
aagagtgaaaccaaaccaaacaaaaccaaccaaacaacagcaatgaaccattcaaaagtt
tattatggatttgatcaaagaattctcaaaaggagaagtaaaagtggttaagaaatatat
tgaatttgtatatccagtctgttagcttatgtctttttataggtgagtgattctttgaga
gaatcaacaagatagataagaccctagccaaacaaactaaagggcccagagacagtatcc
aaattaacaaagtcagaaatgaaaagggagacataacaacagaaaccgagaaaattctaa
aaaaaaagtcatcagatcttactacaagagcttatactcaacaaaactggaaaagctgga
tgaaatagatgattttctacacagatgccacataccaaagttaaatcaagagaggtaaac
tatctaaacaggcccatatcccctaagaaacttgaagaaatcattaaaaaactcccaacc
aaaatagtaataataataataataataataataataattttaaaaagcccaaggccagat
ggctttagtgcagaattctaacaaaccttcaaagaagatgtattaccaatattcatcaaa
ctattccataaaatagaaacagaatgaacactacctaattcattctatgaaactacaatt
actttggtacttaaaccatgcaaggacacaacacagaaagagaaaacttcagaccaattt
catttatgaatatcaatgcaaaaatactcaataaatttattgcaaactgaatccaagaac
acatcacagccatcattcaccatgatcaagtaggctttatcccagggatgcaaggttggt
tcaatacacaaaaatccattaatataattcactatataaacaaactcaaagaaaaaaatc
acatgatcatcttcttagatgctgaaaaggcatttgacaaaatacaacaccccttcatgt
taaaagtattagagagatcaggaattcaaggcccatacctaaacaaaataaaagcaattt
actgcaaactaaatgccaatattaaattaaatggagacatacttaaagcaatcccactaa
aatcagggacaagacaaggatacctactttccccatatcaattgaatatagtactaaagt
tctagctagaacaataaaacaacaaaagccgatgaagagaatacaaattggcaaataaaa
ataaatcaaggtatcactatttgtagatgatatgatagtataataagcaacccccaaaat
tctaccagagaacttctacagatgattaggaacttcatcaaagtggctggatataaaaat
aactcaaacaaatcagtaacctgcctctactcaaaggataaacaaaggctgagaaagaaa
ttagggaaacaacacccttcacaatagtcacaaataatataaaatgtcttgctgtaactc
taaccaaacaagtgaaagatctgtatgacaagaacttcaactctcgcaagaaaaaaattg
aagatctcagaaaatggagagatcttccatgctcatggactggcagaattaacattgtaa
gaacggtcatcctaccaaaagttcaatccccatcaaaatctcaaccaattcttcaaagac
atggaaagtgtaatttccaaattcatctggaaaagtaaaaaaacccagagagtcaaaaac
aattgttaacaataaaagaacttctggggaaattattatccctaacctcaagctatacta
cagaccaatagtgataaatactgcatggtatcagtacagagacagacatattgatcaatg
gaatagaattgaagatccagaaataaaaccacacacttatggacatctttgacagagaag
aaaaaatatacaatgaaaaaaaaaagaaagcatgttcaataattggtgctagtctaactg
acagttggtatgtagaaaaatgaaaatagatcagtatctgttaccttgcacaaagctcaa
atccaagtggatcaaggacctcaacataaaatgagatacattgaatgtgatagaagagaa
agttagaaagagccttgaactcattgacacaagaggttcgggggacttcctaaagagaac
tcaaatggctcaggctctaagaacaaaaattggtaaatgggacctcatgaaactgaaaat
ctgtaaacaaaagacatcgtcaatagaacaaattggtaacctacagattggggaaaaaaa
tcttcactaaccccacatccaatagagtgttaatatccaaaatatatcaagaactcaaga
agctaaccaccaaaatcaaacaacccaataaaaagggggtgggattgaactaaacagaga
attcacaacagaggaattgtgaatggctgaaaagcacttaaagaaacgttcaagtcctta
gtgatcagggaaatgcaaattaaaactaccctgaaattccaccttacaccaatcagaatg
gctaagatcaaactggtctttctgggggagctgtattactgggagtgagttttgaggttt
aaatagcccacacagttcccagttatctctctttctttctgcttagtggttgtgcttcaa
gatgtaagcttacaaagactgctctagccccatgcctgccttcctattgccttcccccct
atatcatcatgatggtcatagactcacactatgaaactcaaagcccccaaataaactctt
tttttaaataaattgtcttgtttattattctcattcaagaaatagaaaagtaactattgt
tgaagatgccatgtaatcggaccaagaggatttgagctggatctgagctaaaactcttca
ttaaggactagctttcatagtaatggaaaatgctatgtaaaccttccaggaggtggttga
acataaataatagtgctatccatttgtgatatatatgatccacaatacttgaggagcttt
taaagatattcctaaaggtgcattagtgacacttataccttggcaataaccaggcaagta
gaatataaggccagttgaacagaaggaaaatatatacttggtactaaaaattcagccaac
ctctcagagctagtgaggtaatggaccttaataaagaaccgactactgccactttatcaa
ccagaatctttgataactctaatctaactatttattcttagaccaaagataagtaaagtt
cttgcccatcaacaaataaagttctttttaaaacagctggtaaccattacagaagaccac
aactgttcatactacagaggacaagtgattatgtgttcccatttcaattaatatatctac
agcacaactcctgaatctaaggcTTAGGGAACATGGCAAAAGAGT
Primer
(+)AAAAAGGAGTGGTCCAACAGAA
(+)actcttttgccatgttccctaa


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