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Mouse element [ mm1945 ]


Position: chr13:15,118,563-15,123,322 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTGCTGACAACCCAGACATAAAattcacttctgaagaaacaaggagtggagtcttctttc
tgcaaactagtgaaaatgaggcctggtaggcagtatacttaatagcatgagtttttgaag
ccaaatatattcaagtttgagtctcagttcaaccactgattatgtgtaagaggcctttgg
catcttgtgtctcatagactctagtgctggccagatgctttatggaaggaagcagtcagg
ataggtatgacgaaaatacattctatgcatgtatggcaattttgagtaataaaagtatgg
ttgatggaaggttgaaacatatttctagacaagaacacagtgccaataacatctttagga
atacagcgttagatacagctggaatcaggcccatggttggcttctggtaggtctctccaa
acctgcttcccaccagacaaataaatctgtcccctcaaatacagttaactatagatgctg
ctatttcccaggcactggcccgcctgctcagaagcagggatagacattggcactcttcca
caaaggcttctttgaggttgactgtagtggtattcactcagaaatatttttctgcctgga
agattaactttcatcttgaaactccacttcctgatttgaaggccacagaataaagctaag
caatcttccttctaaaagaagtccccttgcttagaatggacagtctttcatgacacaatg
ttgctgtaagccaactagggttatgtcaagttgatgtaacttcaaaggcacacttacata
cctccccagtgctctcctatagctgatgcttttagtgacttttgtaaaatacaaaggtcc
tgaagctatagatcctgttcacatttctctgtgattattttgttatatttttattagcat
taaaaaaacaaattgactcagcagaacttaggaaattagtctgaacaggttagagggtgc
gctagagaaccggacagcttctgggacgggcagaagcacagagccgctgaggcagcaccc
ttggcgggccgcagacagccggccaccgtccagacgagaggacaggcgtccgcctggctt
gggaggcggcctcagcctcagaagcagcggtcgccatctgggttccgggactccgcggga
cctaggaaattagtctgaacaggttagagggtgcgccagagaaccggacagcttctggga
caggcggaagcacagagccgctgaggcagtaccctttgcagaatgcagacagctggccac
cgtccggaccagaggacaggtgtccgcctggctcaggaggcggcctcagcctcaggagca
gcggtcgccatcttggttccaggactccctggaacttaggaatttagtctgcacatgtga
gagtctgcaccacagaagctgacagcttctgggaactgccaaagcaacacagcttctgag
agaggccctgttttgggccttcttctttgaccaggaggaggtccaaaaacaagatatctg
cgcaccttccctgtaagagagcttgccagcagagagtgctctgagcactgaaactcagag
gagagaatctgtctcccaggtctgctgagagactgtaacagaatcaccagaagaacaatc
tctaaacagagtcaactataactactaactccagagattaccagatggcgaaaggtaaac
gtaggaatcctactaacaggaaccaagaccactcaccatcatcagaccccagcactccca
cttcgcccagtccagggcaccccaacacacccgaaaacctagacctagatttaaaagcat
atctcatgatgatggtagaggacatcaagaaggactttaataaatcacttaaagaaatac
aggagaacactgttaaagagttacaagtccttaaagaaaaacaggaaaacacaatcaaac
acgtagaagtccttacagaaaaagaggaaaaaacatacaaacaggtgatggaaatgaaca
aaaccatactagacctaaaaagggaagtagaaacaataaagaaaactcaaagtgaggcaa
cactggagatagaaaccataggaaagaaatctggaaccatagatttgagcatcagcaaca
gaatacaagagatggaagagagaatctcaggtgcagaagattccatagagaacatcggca
caacaatcaaagaaaatggaaaatgcaaaaagatcctaactcaaaatatccaggaaatcc
aggacacaatgagaagaccaaacctacggataataggagtggatgagaatgaagattttc
aactcaaaggaccagcaaacatcttcaacaaaattattgaagaaaacttcccaaatataa
agaaagagatacctatgaacatacaagaagcctacagaactccaaatagactggaacaga
aaagaaattcctcccgacacataataatcagaacaacaaatgcactaaataaagatagaa
tactaaaagcagtaagggaaaaaggtcaagtaacatacaaaggcaagcctatcagaatta
caccagatttttcaccagagactatgaaagccagaagagcctggacagatgttatacaga
cactaagagaacacaaattccagcccaggctactatacccagccaaactctcaattacca
tagatggagaaaccaaagtattccacgacaaaaccaaattcacacattatctctccacga
atccagcccttcaaaggttaataacagaaaaaaaccaatacaagaacgggaacaatgccc
tagaaaaaacaagaaggtaatccctcaacaaacctaaaagaagacagccacaagaacaga
ctgccaactttaacaacaaaaataacaggaaccaacaattacttttccttaatatctctt
aacatcaatggtctcaactccccaataaaaagacatagactaacaaactggctacacaaa
caagacccaacattttgctgtttacaggagacatatctcagagaaaaagatagacactac
ctcagaataaaaggctggaaaacaattttccaagcaaatggtatgaagaaacaagctgga
gtagccatcctaatatctgataagattgacttccaacccaaagtcatcaaaaaagacaag
gaggggcacttcattctcatcaaaggtaaaatcctccaagaggaactctcaattctgaat
atctatgctccaaatacaagggcagccacattcattaaagaaactttagtaaagctcaaa
gcacacattgcacctcacacaataatagtgggagacttcaacacaccactttcaccaatg
gacagatcatggaaacagaaactaaacagggacacactgaaactaacagaaatgatgaaa
caaatggatctgacagatatctacagaacattttatcctaaaacaaaaggatataccttc
ttctcagcacctcatggtaccttctccaaaattgaccacataataggtcacaaaacaggc
ctcaacagattcaaaaatattgaaattgtcccatgtatcctatcagatcaccatgcacta
aggctgatcttcaataacaaaaaaaataacagaaagccaacactcacgtggaaactgaac
aacactcttctcaatgataccttggtcaaggaaggaataaagaaagaaattaaagacttt
ttagagcttaatgaaaatgaagccacaacgtacccaaacctttgggacacaatgaaagca
tttctaagagggaaactcatagctctgagtgcctccatgaagaaacgggagagagcacat
actagaagcttgacaacacatctaaaagctctagaaaaaaaggaagcaaattcacccaag
aggagtagagggcaggaaataataaaactcaggggtgaaatcaaccaaatggaaacaaga
agaactattcaaagaattaaccaaacgaggagttggctctttgagaaaatcaacaagata
gataaacccttagctagactcactaaagggcacagggacaaaatcctaattaacaaaatc
agaaatgaaaagggagacataacaacagatcctgaagaaatccaaaacaccatcagatcc
ttctacaaaaggctatactcaacaaaactggaaaacctggacgaaatggacaaatttctg
gacagataccaggtaccaaagttgaatcaggatcaagttgaccttctaaacagtcccata
taccctaaagaaatagaagcagttataaatagtctcccagccaaaaaaagcccaggacca
gatgggtttagtgcagagttctatcagaccttcaaagaagatctaattccagttctgcac
aaactttttcacaagatagaagtagaaggtactctacccaactcattctatgaagccact
attactctgatacctaaaccacagaaagatccaacaaagatagagaacttcagaccaatt
tctcttatgaatattgatgcaaaaatcctcaataaaattctcgctaaccgaatccaagaa
cacattaaagcaatcatccatcctgaccaagtaggttttattccggggatgcagggatgg
tttaatatatgaaaatccatcaatgtaatccactatataaacaaactcaaagacaaaaac
cacatgatcatctcgttagatgcagaaaaagcatttgacaagatccaacacccattcatg
ataaaagttctggaaagatcaggaattcaaggcccatacctaaacatgataaaagcaaTC
TACAGCAAACCAGTAGCCAA
Primer
(+)ctgctgacaacccagacataaa
(+)TTGGCTACTGGTTTGCTGTAGA


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