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Mouse element [ mm1944 ]


Position: chr13:15,114,101-15,118,794 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TCTGAAGGCAGGTAGGAAAGAGggagaatagtagagagtttatagagatgcaacagctgt
cctcttaaaggctcattagcacagatgggggcctcagaggtgacttgttgagaaaaaact
ggtccatgaactctgtaaactacaggcaaaatttcaagtgcatatggatttcttttctgg
aatgagaatttgtaatgcttcttgtttctgacagagatttccaaactattaaaatttgag
atttgattagaagttaaaattgattaaaatctattaatgacagttctaaattgcagatca
gctggaggaaggatcaggtatgagtcaatattttcagtaggagagaggacagaggcatag
gtagaaatgagcttttcatgaacatttactgaagtcaggccatttctgcaagttgctaca
gtggaaggttcagctaattctctaaaatccaatacctttagtatgatataatctttcagt
gtgcttttgtattttcttctagaatatctttagcagtgtacatattttggatatgatgag
acaacaatcagtctcagaaacaattcctgatggcccctgaatcaaggtgccctgcacaac
aatccagaacccctaacacatctgcaccccccccccgagcagctagacaagtcatatgat
aaacagcatatgtatgaaagatatgtcggtgcttcctgcagggccagagggagtcaatac
agaacataaaggcacagaccatacataccatcaccctctaaacctgcaagagaggcagct
tgcaggagcatgacagagttgaatattaattacttgctagattttatgccaaataaaacc
acatgtgtctttcagctgtggtttggaaatgttttaaccctcgatattatctgtaaaaat
tggataggattacatcacccgactgctggtttatacatgttcaactctcatgtcagcaga
gaaggcacttctgtggagttctcctggaggtctccacagagagttggcagacagttggag
gccaagtgagttctggcctctgcctatgcaatatggagagctacatctgacatcttgagt
gcttggaactgcactttagtaagcaagagtccacgactaggttacttcaatccaactgag
taggaggttcaaattagcctgctcatagactaacatctgagtagttcagaaaagaagtgt
gaagtgctaacatccacttaccagggagtgcacaccatgtgtgttcttctgtgactgggt
tatctcacgcaggatgatattttctaattccatccaattgcctaagaatttcatgaaggc
attgtgttgggttttttggggggggggattggatattttttatttacatttcaaatactt
tcccatttccagtctccccttcagaaacccccaccccatgtcccctcttcccgcctttat
gagggtgcttcaacacccacccacttccgtcctccttgccctagcattaacctattgggg
gcatggaatgaatgcaaaggcagatgctcacagtcaaccactggactgggcacggggtcc
ccaatgaaggagttagagaaaggacctgaaggagctgacggggtttgcaaccccatagga
agaacaacaatatcaaccaaccagacctcccagagctcccagggactaaaacaccaacca
tagattagatatggagggacccatggttccagcctcatatgtagcagaggatggccttgt
tgggcatgaatgggaggagaggctcttgatcctgtgaaggcttgatgccccagtgtagtg
gaatgccagggtgaggaggcaggagtggatgggtgggtgggggagctccctcataaaaac
agagggagggggaattgcataggggggttctggaggagaaactgggaaaggaaataatat
ttgaaatgtaaataaaatttccaataaaagaaaaataagaagcatgaagaaaagtaaaag
agtctgaaaacggtatataaatcatgtgggaatccattgaagaaagaataaaaacaacag
gttgaagaaaacaaacaaacaaaataaacaacaaaaccaacaaaaccacaatgtgttaac
taatgacaatatttttccataacactttacctctgaggtactggtgcatcccaatatcat
tataggttagggattaggttttgacacatgtgtgcctgaacaatacaaacagtatcacca
gtggtatttctatgatatatgcttaaaagaaatccttggttttaggatgatgtatcagat
aggaataaagaggaagaaaaaaagtatattttgagataatgtaaaatgagtaaggggtca
ttatgagaaagcaaatgtatacagaatttcaaatagactaataaaaatacatgaaattat
ggagaaagtcagacataataacacaaaaataagcatttaattaagatgtcaataagtaca
ttgattctgaggttatttgaaaatatgcatttgccatatggaaaccctctattttatgtt
tcatatttatacttacattaattaattaattaattgccattaccatacacagaatatttt
cctaatttcagatgtaactgttgccaaggtaaacaacaagacaaaacaaaaaaacctagt
acctgatgtgaaatatgtcccctcgaattgctggtcatagatgtccctgaggtccttgaa
gcaatgcaggttattgctatttgctttgggttgcacatagaacttgatggtgaaacacta
ttgctgacagcgccacacatatcagtcacaggccatggaaagattgagttgatactgacc
aggaagttgatgttggctacttttcccggtactagaaggtgctatgcaggctgatgagat
tagaagagggaagtaatcagcaatctgacccagcttggaaccctgtctaccacagtaata
aatggcagaggaagctgtacacattgctgcaaaggtggaatgaattttacagggataacc
agccactatctgattggatttaagaatcattccacaggagggaagatatgcctgtactgc
aaatctgaccaagaaaccatggctaagagtcataggctccagatttgagcctaatagtat
tctgctcaataaatatagtatcaaattgctctctaaattcatataagtttatcagctgat
taattcagctcttagaattcaccacaaaaattctttgtgccatagatagtagataacaca
aactcaaactactcaaaagaataagtggctgtggcaggttaagccacaaacgggacatgg
acaccacatgtctttccttgacttggggaccatcatgggagaggggacagaaaggattta
agaaccaaaggtcaaggagggtcagaacaaaccaatgtcttctaaaaaaacaagtaaacc
aaccaaccctcgcaccaaaaaaacaaaacaaacaaagaaaaacgaggattcctgagctca
tgtggttgcctgcacaaaatctacataagattaagccatcaatagtctatcaccaagtgg
caaaggattcatgaccctccattctgaggagttactgacagttgaccgattccaggagaa
ggaaatcatttccttttaagggtgtggcttctggtaggttgaacccactccagtgaatgg
ctccacacagataaatcctggacagcacaaattgaagtagataggttatcaattatttta
aagaacacaaaattgagaggttagggagatagaagtggatctgaaagaaattaaggggag
gagatggaagtaaataatatcaaaacacattgtacaaaattcgaaaataataaataaaat
attttaaagaaaagagtaaaagtctaagttatttatgagggcttaagatgagaattggca
gaaatttttagaaagtaaatttcttccaaatttttaggatgcctaattcacaagagaaaa
gagctaggtcaagagtgaaactatactgctaagaaaatggtttaaatttgaggggttttt
ttttccacgaaagagaattgaaaacatttataaaccaaaggtagtagtagctcaggatag
ggagaaggaagagagacagctgtaagtgaagttctgggttaatgaggaagcagggagaac
cacagtacagctggatacttcacgaataaagtatctgcaagttgagaattccaaaggcaa
ctcagtattcaaaaatgctgtaggatgtaaggtcgccttatgaagggagaaagacatgta
tggaataggttcgagaaaaaatgtgaagattttatgtttggtgaatagaaagggagaaaa
tcaaagacaaatggagaagagtcaagatgtatcatgaggtgaccaggaaactgtagccat
tccaacatctggagttacagtgttcctgtctgctttcaggcttgagagtgtagcaacagg
ctgggtgttggaaacacttctgctgctgacaacccagacataaaattcacttctgaagaa
acaaggagtggagtcttctttctgcaaactagtgaaaatgaggcctggtaggcagtatac
ttaatagcatgagtttttgaagccaaatatattcaagtttgagtctcagttcaaccactg
attatgtgtaagaggcctttggcatcttgtgtctcatagactctagtgctggCCAGATGC
TTTATGGAAGGAAG
Primer
(+)TCTGAAGGCAGGTAGGAAAGAG
(+)cttccttccataaagcatctgg


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