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Mouse element [ mm1943 ]


Position: chr13:15,135,762-15,140,536 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTCCTCAACTGAAGCTCCTTTCtctgtgataactccagctgtatcaagttgacacaaaac
tagccagtacactcatattctgtctaacgtgggctccgtgggaattttgggtttaaatcc
tgacatgacaaattagaaagtcctaaataggtaaaatgtgtgtgattttgagtagtgtgg
tggttttattgttcctctgaaacagaggacaagctacaggttttgctggttacttgttgg
aggatatgctgatttggagaaaaggttttgtctttgtgtttttggaaaaggtgattaagg
tatttacaccttccagagttacatggatcagatttgatagagcgagaccccgtgaactag
attccagagaattaaacataatgtttatcttgatgatactaaaattttgttttaagattt
atatattacagaatatagagccttggtgaatttcatcatcagacatgctgaactgtccta
cctgaactcctaatgtcttgatttttcatctggatccagtcaggacacagacatcagaga
ctaatacaatcattgctccagccttcttaaggccaactaactcccccatttccctaccct
tccccctcccttcaaaaatatctcaacacccatattcagctcgaagaagttatgaagagt
cgtcatcctagttccctaagctttggggctgagggtgattattataggttgtctttgata
ctaaaaattttgaagtacagggcttagacccagtccttctattgctgttattataaacag
atctgagatgtttaagcctgtgagttaagggccaaatagaaaattcatggctctgagttt
attgttaggatgttttcagttattttaattagaaatggctgagagaagttaacagacaac
agtctagattacttcacatagttagttttcaaaaacatcagaagcccacagaatgtgacg
tttaatgctattttttcatttgttgttgagtccagtctgctcctaacagctttccctgtc
ttggattcaaagaagaaactgagcatctttgagttactccagttatggcaaaacagccac
aaggcaagaattgcctcatttcacctacagacataatactgtccaaagaaaggatgctca
gagtcagctattggctatttttctagcccctaatggaggagctagaaaaaatatccaagg
agctaaagggatctgcaaccctataggtggaacaacaatatgagctaaccagtaaccccc
accccccagctcgtgtctctagctgcatatgtatcagaagatggcctagtcggccatcag
tggaaagagaggcccattggtcttgcaaactttatatgcctcagtacaggggaacaccag
gccaagaattgggagtgggtgggtaggggagtgggggggtggtatgggggacttttggga
tagcattagaaatgtaaatgaagaaaatacctagttaaaaaaaagaaagaaagaaaggaa
ggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggacacaattacaggttagg
acagattgattctgccaagacagagtaggctagtccttaatattcctgtttctctaagtc
tgccagatgaccctggccagtaggctaaagactgatgctccaatgtgttgaagtaaaggt
ctgtccaggtgatcagcagtctctatggactggctaagttttggaagctgttttaggctt
cctatatattttcagtcgttaatatcagtcattcttgggtttctgatggggttgaaaaac
tacatagtctcctagtcaacccaggctttttattttgagaggaatagttttgagagggtg
gttttcagatggcattcaatctaaagtgaagacatagtcaaatgtagaattaaaagtctt
ttaagtaaggatagatgacagaggttctgtttaattaacaaaatgatggactgggtgtta
ggtctcttgtacattataaattacaaaatagtagtagttatgttcaattatatctgagat
aaaatagtcttttaattggacagaaagggggaaatgttgtggatagccctggagctaatt
atatttgatgttaattctggtttcctgtgagtggttgtgagcaaggaatgagtcagcact
caggtgatttcttgtaaaccttcttcctaccttaatttgtaaaataaaggagagctgatg
attgggcagataaaagggaaggtggagcagaaggtgggtgagagaaggaggagaaaatgg
aagagggagaggatgcagaggaggaggaagaagaagaagaaaagctgagcagaagcacat
ggtctggagaaaccacaagttctaaggggtctcatagatgtggaagatggtagtgtagca
gtagatctgcccattctaggcgcaatgcaacatattaactgtgttatgttttcatttgct
ggggcttgtttgggaggagatttactgaaacagagataaaactattcttaacaataaaag
aacttctggggggaatcaccattactgaccttaagttgtaatacagagcaatcatgataa
aaacaaacaaaacaaaactgcatggtattggtatgtgacaggcaggtagatcaagggaat
agaattgaagactgagaaatgaacccacatacctatggtcacttgatcgttgacaaagga
gctaaaaccatccagtggaaaaaagacagcaattttaaaaaatggtgctggttcaactgg
tggttagcatgttgacaaatgcaaatcgatccattcttatcttcttgtacaaagtttaag
tccaagtggatcaagaacagccacataaaaccagatacactaatactaatagaaaagaaa
gtgaggaagaacctggagcacatgggcacagggggaaatttcctaaacaccaatagctta
tgctctaagatcaagaactgacaaatgggacctcataaaattgcaaagcttctgtaaggc
aaaggatactggcaatatgtcaaaatcctatcaaaatcttgttcaacatccttagtcatc
agggaaatgcaaataaaaacaacactgagattccacctcacactagtcagaatggctaag
atcaaaaactcagtattctgttttctaatccaagctgctagtttctcccttgttactgag
atattgagataatttattaagagttattgaaaggcatgttttaattcttgtcattttgtg
aagttttaatatctcttttgatgaattgtactggcattgtttgcttatcctctatggtgt
ttttgttgtatatctgtttactctaaagttggcttagtggtctttcagtttccattatca
tgcaaagcttgcatttcttctttagtttatgtagtcttgttgagtatgaatgtcttggct
gacagacttggtctttccatagattgaatgtgtctttgtaggctctctggctttaaaaat
cattgacaagtgacttgatccttccttcttgctactttcagtagcctttcttttgtcttt
agttctcactcatgttacattcattcaaaatttttcttcattaacctttgctaaatgatc
caagtcctgtactttgtctccacactttaagactatattttgtacattatctgtttcatt
gggtaagcttttcactttgtttttaatttgtcttgttgggctttttatttcagcattatt
tcagtatgttctttaaaaagtccatctctttattgaattctagtttcatatttttattca
cttgcttaattaattccgcacttaggctttgtcctctctaaatatgtttatggcttcctt
gagttgtttgaacatagttgtaattattcttttaaattatttgtccggaatcttttccaa
ataaatctcactaggaggcatgactatggaattaacttatggaaaaggcatatcctgttt
tttcatgttgtttttacttctgcacttggacttgcatgtctggagtttgttcagtaagga
tttttctcttttctctttttcattttcttaattttttaatttcctttcttctttccattc
aagagagaactgaatcatagtagggttgaggttttgctttcctctttgggactggtattc
agtgcctgaggctctatctataattttcctatgagtgtcaaatattgtcttatactggat
aaagcatcgtccctgggtcttcagaattgctgagcattatagaataccatgtatgcctgt
gggctttacctgtgtcagatatagttcacaccttgcatcaaaaacttctgctgatgtgaa
acacttcatgtgcctgtaggcctttaccctgggtcagatctcatcctgtatcttggacta
aacctttgtttgcctggtctgcagattgtggtaatgtttgtaagctgtatgtcctaacta
cattctaaatatgtgtccttatacacacacagataaatgtagtcttaacccctcatcaaa
gcagcctttgtttgcaacagacaggagagtattacagaaaatcatttgtgggatgcacta
catatgaatatatctacaaaacaagtcctacatccaaggttcgggaaaaaattgcaaaag
ccagagagtcagaaagttttctgtgagattgtctagtaatgtatgatgccacattcataa
aatcttacctacatggctccagaaatgtgagctgaagaagaatagcaatagacaagccaa
agaagatgagagaAAGACCATGATGCCTCAAAACT
Primer
(+)ttcctcaactgaagctcctttc
(+)AGTTTTGAGGCATCATGGTCTT


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