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Mouse element [ mm1940 ]


Position: chr13:15,846,055-15,850,966 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3 - 4933412O06Rik

Timepoints:
e11.5

Reproducible staining in the shoulder/neck region.

Expression Pattern
hindbrain (rhombencephalon) (3 out of 3 embryos) 
other (3 out of 3 embryos) 

Embryo 1

Embryo 2

Embryo 3

Fasta sequence
CATTGAACCTGGTGCTTATCAAttcagttagactggttggtgaaagaactcaagaagcta
attgtttcatgtcccctgtggttggtgacagccaacaccttccacacatgaattcatgtc
tttaggcagtcatcaactcagtcatcttccagctctaacttgtgctgatttaaaatcttg
tgaactttcacaagaattttagccttttaaaatttcttcatttgcatgcagttgaaaagt
atatagatctagcctggtgcaattccaaaagcctccgtaatcgtctataatcccgaaggc
tctttcttctcagtgactcgtggaaataattgtggcaagaactatgatgcacagatttct
gaggatacaacgtcagcacattgacatggtgccaccagtctgcatgaagattccccaaac
tcaagagaagttaatgacttcacggcattctaccaatacaaagactagcaatgattagta
acatgaaatcctgtggatggatgaggtatgtctaaatcattatggatttgtggacacatt
gatggctttttagtgcattctggagggatctgaggacgctggttctctcttatctataat
ttatgatgatttagaaaactaggctttgtgaacagaaacaaaatatttacctccttgctc
ttccagaactgggaattctttttgaccaggtctttatttactacaacttagttatttgca
tagaacaatctctttccttgtgatagaaacaatggttaagtaataaagtcattgactaaa
atgctacactgaagagtaatgtgtctgaaatcagacagaacttgacagttttaagtaact
aaggttgactttatggggtcaatgcttacaaaactgttgggtattggacttcaggattcc
ttgttcacaggtgagtcaggagggccaagtactggcaggtaaggaatctttgcatgtgga
ggggagttttaacagcagagacttttgctttgaactgtgggtatcataagaaattcagag
ccgtgtacatggcttggtttctagactggagtcccatttaaaagtcccacttaagattgc
atagaccaagttaccaaagcaaacttgtggtcactcaccatccttagtattttaattggg
catcgtctaattgcttattatgttcaaaatgatacttttgctttcattagtttgatcaag
gagagaaagagctacagagaacattacgtgtttcaaaagaaaatgataagacaccctacg
gaatgatcagagctcatttcttttgttatctttgagatcctacagagttagtaagcagga
ttagatccttctatctttgtcactttctgctaaattttaaatacttctagtttccttcaa
tagctggcaataatgctttaatattttccacttgcctcactcctctctgacttcatgtca
ccgagactaaaactttagttcgcagatcaccacattgtcttgtgtacaagaaactcacca
agaacctcaaggatctctctagaccacatccgggcagcttcagagcttgtacaagtggct
tagacctagacagtctccatgcctgtagtcacaccctaaaggtatgtgctcacagaagcc
cacatctcccatagtctctgatattgactttgatgcctgtgattgctaaagacattaaag
gtgagatctgggaaagccaatcagactgacccactgacctcgcttcactatttaggacca
agttcagcccagctagacctttcaactggctgtcctcggactcagagatgcttgcctgca
cccgcctttcatctgttcctgtgccgagcgctcggctctaacctgtgtcttttctctgca
acattcagcccagaattttgtctgaaattacttggaaagcttgaaatgtaggaaaggttg
aggtcttctaaaggaacaaacaaacaaaggacaaagcaaagcaaaacaaaacaaaaacca
accagccaatcaaccaaagaaccagtgatgggtgataacagtaataacaaaaatacctca
tctctaagactctttgtctaaagtagagtcagttccttcaactttcctcccacatagtca
gaggattctctaggcagggcagcaactgatctctggtgttggaacactgaaaaaaaaaat
gctaacaaacctcattcagttctcatctaccaaatttttgtcttcagaccttttgttaag
tcaacatgttaacctttacttgtggttattcagtgaattactcattctcaagtgttcctc
tgtgtttgtgaataagctgtcttttcttctgaggatctgttcattgtgaatctgtggctt
ccaacttttcagctaggaatgaagctgaaaagttttgcttccaacattgttcgcatatca
gtaaaatcctcacaattttcacccagagcatgaggtcccgaagtggacaaaggcaactcc
taactgtgtgatggctatttctaaaagtgatggtagtgaaaaatgggcagtgatgttgga
ggatatgcagtggagatgcagtcaaaagagtgcagccttcagaaagaactgagtccaggt
caaactccgtaggtggctacagttcagttcctgggctccgcaggagacagacagggatgt
gttcagatgataaatgaaccctcactgaaggcttgttgtgaggacaagatgaatgagcca
tgcagagcacacatctcagatcccacagcatgcaagggcttggctgttaacgactgttat
tgtgaacttgctctgtataaccctgagcaagctatctgatctttctgaggcgatttaacg
tagcagggcacatatggatatttgtggtagcaaaatctaagtaaggcaccgcgttgtttg
gtacagtttccaccaaataataggtcctctctgattggtgctttaagctccactgtagac
cataagagctaatgaggtgagttttataagagacggaatagtctcacaaaaacattggca
catggctcctttagaatagagatgtttgaggtgaccttaaaaccacaactactctttaat
gtgatctattaatggttttctcaacctggtccatactccatctgtcagccctcacctcat
ggtccatttcagacactctggactggtgaactgatgggtcatagttacctaagctctcca
ttcaggattatctgaaaaacatggttcttagccctgctctacaactgctggggagagtct
tggttaggcttaagtgttattaacatataagtccagggtgtggcaccaaatcatgaaaat
gaggctctggcagagccagcccaatcgtgggctgtgcaaagagacatgaacacacatact
gaaaccaaccatgaggtcccacattcttggacaactagagaaagttccttggagaccaac
ttcttccatccaggtctgtggagacaggaatataccagggccagggtcatgggacacgcc
ttcattgggatgttgtcaaagaatgagccactttaaggtttcttaggttttaaccttcaa
ttatccctgtgtagttaatgtcctcagccacatggttttgaattgtactgtttatttagt
aactccacagaactgctggagtttggctgcatctctctccagttacagaatgagtaatcc
tgaatacctggtaacacacgtcggggaagaatgatagacagcacctcctaaacaaactct
actgcacatgcagcgccttatctgctttgtgtctaatctttaatttcacagaataatatc
ttactaacaacacttaacaagtgagtgaaagggggctacagagatgggtcagcagataag
agcacttgctattcttgcacgggacattagtttgattcacagaatccacactgggcaacc
ttacaaccaactgtaactccagctccagaggatatcatggccttctctggccttccagaa
cacttagacaggtggcatgtagcagaacacgagagggagagagagagagggagagaggga
gagagacggagagagagggagagagagggagagggagagggagagggagagggggagaga
gagagagagagagagagagagagaggatggagtatgattgtgatagtcgggatgcggtgt
tggggatatagatccattgtccagaacctctcagaatatgccagaacatagcttcatcct
gcttaggaaatgaagtcctagccataactggtcagaggaacctgatgacaaagctgcccc
tctctgagggcaaaggcaagtgcctgagttacctggacatggagaggggggctcctttct
acttaccacttactttagctgtggagccccaattgtctcatctacctaacaagataatca
ggacagaatgaattatataggatgccagtgggcatcaggacaaggctgaacattgttgct
gtgcttccaaatacagggttcaacgaattcaatatggataggcaacccttccaaagatga
aataaagaggatgccaaagggaaccagctgactagaaaaggcactctgtaggtgggggta
ggaaggcgtggtgcatagaggcaaagctgatgtatgggcaagactgtggcttggacacac
agcccacaccgacaaagaaatcttggattggggacaccagaactgaattttacagagtag
ctaactgggacgtatacttttgggagaatatggaagaaagtgaatgggagaagctgcagc
ttccttgggcgattaagcctcatacacaacggtaacagagcatttcaatcaaagaacagc
tgctgttgcacggtgccagagggagaatccttccagtcccttttctgctgcttctatttc
cggtgttagccagagaaaacaaaacaaaacGCATCTTTGGAACACACTACCA
Primer
(+)cattgaacctggtgcttatcaa
(+)TGGTAGTGTGTTCCAAAGATGC


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