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Mouse element [ mm1939 ]


Position: chr13:15,841,944-15,846,479 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3 - 4933412O06Rik

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CACAGGATGCCTACAGAGAGTGctgtatgtaacaacatgcctcaatgtgactgctcacac
aagtcaatataactgatggtagacatgagttacaatcagaatgagtatactcaaaggaaa
ccactaaggattaatgaagatgatgctgctatttgaaaagtccaactctatggtatgtgt
tgaaggactttaagtcagcacacctcagacatacttacagatcttcatttaccacagcac
tatttataaactagccaatacatggtatcatcagagaagcttgccagcagatggatggat
tttaacatgtggtacttatgcatatagtgaagttttaaagctataaaaaattctatcatt
tgcaggaaaatggacagatgtaggaagtgagtgaaggtctgagtggatgtctattgttgg
cattgacatggtcatgtccaggacctcagtgcctcagacccaggggaactcagcaaagcc
ttccttggatgaggtccagaggtatggccaagccttcctttggcctgagtgcaaatgttg
aaggtgtgtacagaaaatgtctatcatagcattttctctaagagcttttataccctgaag
actactttcctataaaaactactcctactgagattagccaattttgcttcttcattcagt
tgtatataataaccttgcctccttatttatctatatgtagtaatcctatatccttgttca
agtatattgcagtaacccacttccctgttcaattgtacataataaacatgttgagctgct
aggattccattgcttctccatcagagctcttctgagagtctagtttgtctttcctttatt
gtctcacagccatagtcaagccagtccttggatctacgtgtgatgtggcagatagaactg
gggatctttatgttaagcaaaataagtcagactcaacgataaataccatgtgtttttcaa
atatgtggaatccaaatttaaatacacagacacaccatatgtgtacacatgagatgaaag
cagagggaggcatatctatttgaagaaagaaggagaccaaaaagagaaaaagggggaaac
agaagaagggttgacaaaaaggttggaatgagcaaagtatgatatatatgcatgaaatgt
cattgtttttgcctgttaaccaaaaacattcataaaaagccagaacacattaaaaaaggg
agtatgtaagcaatgtagggtacgcttttctaaggagagagctttgttctaaagtaatga
gtagtatttctaaaatgataaggaaagacacgtagaatgaaccctgaatagatgtggaaa
cctaaatgtttccaaaagcaattatgttttgtgtagtccaagttatctaagtctgattac
attacttttatgtatccaagtatacatttacttttaaggttttttttaaaatgattttta
atacctatgattctggggtataaagtgaaagtgtcctgcttgctgtgtgtcctaccccat
gttttacaaacttttcctgggttattggtgtgttcttaataaagaatttatataaggttt
gtttgcttgctttgtttgtttgttaactgtttgagtaatctgtatggaaaacactgttct
agtttcctttctattctgtgataaaaacaccaccactaaaaacagtttgaggagggaaag
tttcatttcagcttacagattacagtctatcttgcaggaaagtcaggacacaaaaatcaa
ggcaggaacctggaggcagaatctgaagcagagaccacaaatgagcttcctcccacctgg
tttgctcagattgctttcttacacagcttagaaccacttgtccagggatggtaccataca
cagtggaagcaaaccccctaccccatgaataactaaccaaaaatatgtcccagaaacttg
tctacaggccagtctaatagagacattttaacaactgaggttacctcttccaagatgatc
ctagcttgtgtccaattgtcaaaactcagattttatttgtttgtataatttcctatctgt
catgatgacttgattatgtgcctgagagaactaagttgtctcactttctaaggcagataa
gtttctaattttttaaaaatgtacatgttactttaaacctacttttaaaatattcttgtc
actttggctaaatagatacgtgtgaatgatttcacagtgccctatgaatcaaaattcaaa
cttgtagatacttgttgacattttgctgttatagaatacaaatacatacattttgaatat
agatacattgtgatctgctttctcccaatatcaagttctattagaacgttagatttcaga
ctaactttagtatttctctaagaatctctgtaaagccttaaagttcttggagacagagtg
acatgatgtaattgcaaaggtcaaacagcatagggagcgtttcccaataagaacagatgc
ataaccttccctaggtcagtgtatacaggcaaaatgttcatagtacatatgttttcagaa
ttacatttctcaaatttaatgaacattctttttaaaattttccttaatatttatttttta
aatttttattagatattttcttcatttacatttcaaatgctatcccaaaagtcacctata
ccccaccccccgccctgctcccttacccacccactcccacttcttggctctggtgtttcc
tctgtactggggcatataaagtttgcaagaaacaaggggcctctcttcccagtgatggct
gactaggccatcttctgctacatatgcagctagaaacacgagctccggaggtactggtta
gttcatattgttgttccacctatagggttgcagaccccttcatctccttgggtactttct
ctagctcctccattgggagctctgtgttccatcctatagatgactgtgagcatccacttc
tgtatttgccaggcactggcatagcctcacaagagacagctatatcagggtcctttcagt
aaaatcttgctggcatatgcaatagtgtctgggtttgctggctgattatgggatggatcc
ctgggtggggcagtctctggatggtccatcctttcatcttagctccaaactttgtctctg
taactccttccatgggtattttgttccctattctagggaggaatgaagtatccacatgtt
ggtcttccttagtcttgatttttttttgtgttttgcaaattgtatcttggttattctagg
tttctgggctaatatccacttatcagtgagtgcatatcaagtgacttcttttgtgattgg
gttacctcacttaggatgatatcctccagatacattcatttgcctaaggattccataaat
tcattggttttggggttttttgtttgtttttgtttttgtttttgtttggtttggtttggt
ttttgttttttttgttttttttgtttgtttgtttgtttgtttttcgagacagggtttctc
tgtgtagccctggctgtcctggaactcactctgtagactaggctggtctccaactcagag
atccgcctgcctctgcctcccaaggattaaaggtgtgcgccatcatgcccggctaaattc
attgtttttaatagctgagtagtactccattgtgtaaatgtaccacattttctgtttttt
ttttttttaaagatttacttatttatttatgtgagtacactgtagttgtcttcagacaca
ccagaagagggcatctgatcttattacagatggctgtgagccaccatgtggttgttggga
attgaactcaggacctctggaagagctgtcagtgctcttaacctctgagccacctctcca
gcccctaatacacattcttaacaatacattcagtactcatgggatgtttcagaataatgc
tataatcattctagttatgtttaataagttataagtaccagaaacaaccaaattttcttg
caagctgtgctatatgttgtgttaagagtgtgtgtttgtgttggtgtgctcctgttcatg
tctaagtgcgcacatacatgtggagaccagaggttgagattgagtgtcttccttgtttgc
tttgtatcttattttctgagacagagtctctcattgaacctggtgcttatcaattcagtt
agactggttggtgaaagaactcaagaagctaattgtttcatgtcccctgtggttggtgac
agccaacaccttccacacatgaattcatgtctttaggcagtcatcaactcagtcatcttc
cagctctaacttgtgctgatttaaaatcttgtgaactttcacaagaattttagcctttta
aaatttcttcatttgcatgcagttgaaaagtatatagatctagcctggtgcaattccaaa
agcctccgtaatcgtctataatcccgaaggctctttcttctcagtgactcgtggaaataa
ttgtggcaagaactatgatgcacagatttctgaggatacaacgtcagcacattgacatgg
tgccaccagtctgcATGAAGATTCCCCAAACTCAAG
Primer
(+)CACAGGATGCCTACAGAGAGTG
(+)cttgagtttggggaatcttcat


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