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Mouse element [ mm1938 ]


Position: chr13:15,819,852-15,824,660 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3 - 4933412O06Rik

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGACTAGGGCTTTTGTTTTGTattcagattttaaagatttacacagtgcagctgctctt
cacatgtagatcagatatgagagtcatactgtgtgtacacagagttcagggattatctta
gcatactactttaaaaccgtaaacaattaaagtgtttacccatcagccccaacatggaat
ttccccaaggctgttattgaccgggttgtgtgacttctcctcttaaatcctgcctgtaaa
tttaggagtaggaaggcgaaacccagtaggtgttaggtaataggaaggatgctatgacca
gccaatttcacttaggcctgttttctctcttttggagcccaaacttcaccagggaagaaa
ctttgccatgtaggatgacgttgtggctaagctagctttctgatagatgtccccaggacc
agtcaaaccatctgtaagttcaccgtgccctgcagccttctcccagaggttccttataaa
tcaaaggacagcccacaagaaaggggaattactggtctgagttcaggagagtaaataaag
caaggcttctttttgcctcaaacaggtcacagtgtcatcacaaaatgggtgatggaatcc
ctgaatttcatttatcaaaagtcttttttgttttttaatctctggtttgggtctgacctg
gcatgccttattatttggccaaatctctttattacttttgatttcaaagaaggggttcag
gaattcttccttcctcagcaagaagaatgagcttggtttctggtcacacccattgcctcc
tgcagcagagacctctctaggtggaggccttgcatgtgaccttgatgttctcaagtgcag
tgattttccatgttagcggtccctcctaggaatgcagtgcacagagccagcacccctgcc
ttcttaccttctgcttttgactttttcattgttttcttttttcattgtttttttttttca
tccttatttttcaagctattgcctttagatttttggagttgatgtttccactcactatct
gacctttcttgatatgaagatttcaggatacagatttaaaaaaaaaaaaaaaaaaaaaaa
aggagagtcaaaagtgttctatcccaagatttcaccaatctgtcctgatagtccagttca
agaatgatcatttggtcactatagctaacccatgggacatgagatctctttaggcttggt
ctttcctgtcaaaatcccactcctggtcagcagcccctttccagtccttggctcttgtat
ttaggagaaacagctttggctctctcatgtcacacacagctgctttttaatgaaagtaca
ggctcatacatggtactcttgtttaatgtctgtgttaaatggtttggtgtttgtttgttt
ttttccataatttttctaaagaattaaagaactcacttccctgctcctcacgtgttggct
tgtcctgagccacgggttttgattcttgcaatgtatgtgccttattttatgtttctcttg
tcgatgagaaggaccagttgttgttgttgtccagtcagcactcagaggctgcatgcccag
acagtgtcaccaggaagtgaacacaggactgtggcagtctgcggtgttgggtgacccgat
ttcctgtgttgtttgaagctaataggagggtgttctcctctgacaagttacgcttgtata
tcctgcagatgtgtaaaataaactgtgttccttttcgccaccattttttagattttttaa
agaagaaaatgtgtaatcctttttaaagaacaacacaatgtaaatacattcaagtattgt
agacgtagagttgggatgtgatggcctcgggccttccttggaaaagcctgtggctgctca
gtgctcctaagccatgagaatggcagcccagaaacatgaactctgccttggctttcagaa
ccacttagtccttttataacaaagaaaaaaataaataaataataaaaatgtttcttacag
tgtcaataaaaaaaactttgtactgaaatattctactggatttcttttatttaattcctg
tttttaagaaaaggacacgttctcaagaaaactccccaggctatagttgactccccagtg
agtccatgggaaggagacttctgatggtaatgtggagggcactattgcaaaccagtgtga
acagcaaaggagacaacatttctgaatgtagatagtcactggaagctgtgttaaagtaag
cctccatgggctggtgagatggctcattggttaatggcactggctgttccagagagttga
gctttgattctcagcacccacatggtagcacataaaggcatgcaactctagctccagggt
tatattagacttatgttagaggtctctagagagacagagatcatagagatcgtgtgtgtg
tttgtgtgtgtgtatgatttattaaactggcttacaagctgtggtctagctaatccaacg
atggctacatattaacagaaggtccaaaaatccagtagttgtttaatccatggtcttcag
tgttctctgaaatcccaaagaagtaggctttaatgccagtgaagaaatatacttgctaac
aagagcaaacaaggaaagcgattatttccttcttccaagaagtgaagtctaagttaaaga
tagatcctcccaccttagaaatctggattagaggtttaccatcctgcctcaaagacatgg
attagaagtgagtctttccagatgatttaattaagaaaaaaaaaaatccctcacaggtat
gcccagtcatttgggcttttgttaattccagatgtagtaaaagtgacaactaagaatagt
atccatcacaccagttgaatttactgtatttattcactagaaggagatgaaaatgctggc
aaattaattgatagtataagacattcacctcacatacacaaggttgtacagagcatgtta
ataggcctatgtttcttatttttactgatttgtccaattctgtggaagggtgataagagg
gttaaaaatctgacaacttgtctcctttttatatactatccttttatctagagatacacg
aacacataaatgaaaacctggcaatatagagacttttccagcacacttcttttaaatttc
tactttattctatgtgtatgagtgttttgtctgtatatatgcctataaaccatgtgtata
tctggtacccacagagccagaagagtgcatcagatcctctaaaactagggttgcatgtag
tcttgagccaccatgtcggtgctgagaatcaaactctggaagaatagcccgtgccattaa
ccactaagccatctctccagccccatggaggcttactttaacgtggctttcaatgactaa
ctccatttagaaatatctttgtctttgcattttcacactggtttgcagtagtgctctcca
cattaccgtctaaggtctcctttgcactttgtcaatgcatgttgtatgccatcaatttag
cactgttgctgggaaacgggtgctgactgggtatcccaagacacagtatcagagcatcct
ttgtaaacacaggcacacatgaacttgagcatgccctattcattcccaaggggaaattcc
attgcccccaaatgctttgatctctcacaaaatgtatccaaataaatttggggaaaaata
agaaagcttgaatttggaagggtgaatgagaggactgcagaagcaacacagcttctggga
cagaccccttttcgggctccagacatccgagctccttccccgccagagaagaggtttctg
cctgggagggcttggcctgagcaggtaagggggccatcttaggtccggatacctcagaga
ctagtctgcccaggtgagagtgcagactacagaagcaacacagcttctgggacagaccct
gtttcgggctccagacattccaggcagaggagaggtgtctgcctggaaggactctgacca
ccagagcagatgagagagtcatcttgtgtcccctgtccctcggagaccagtctgtgcagg
tgagcatacagactgcagaggcaacacatctgggaaaggccctgttttgagccttcatct
tcagccaggaggcaggtctgaactccagatatctgtgcaccttccctgcaagaggagagc
ttgcctgcagagagtactctgaccactgagactcaggatagtgctagtctcccaggtctg
ctgacagaggctaacagaatcacaggaggaacaagctccaatcagagacaactataacaa
ctaactccagagattaccagatggtgaaagccaaatgtaagaatcttactaatagaaacc
aagaccactcaccatcatcagaactcagcactcccacctcagccagtcctggatacccca
acacacacgaaaagtaagactaggatccaaaatcatatctcaagatgctggtagaggact
tcaagaagggctttaataaatcacttaaagaaatacaggagaacactgttaaagaggtag
aagtcgttaaagaaatacaggaaaacacaaccaaacaggtgatggaattgaacaaaacca
tccaagacctaaaaagggaaatagaaacaataaaggaaacccaaaatgagacaacgctgg
agatagaaaccctaggaaagaaatctggagccatagatgtgagcatcagcaacagaatac
aagagatggaagagagaatctcgggtgctgaagattccatagagaacatgggcacaacaa
tcaaagaaaatgcaaaatgcaaaaatatcctaactcaaaacatccagGAAATCCAGGACA
CACATGAGA
Primer
(+)tggactagggcttttgttttgt
(+)TCTCATGTGTGTCCTGGATTTC


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