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Mouse element [ mm1937 ]


Position: chr13:15,811,950-15,816,054 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GAAACACGTGAAGACTGTGCATggccctgaggctcatgttaccaagaagcagcgtgggga
catgcaccctcggcctccacccccgagagattccggcagccattcacagtccaggtcccc
tggccggccaactcagggagcatttggtgagcagaaggagctgagcaacactacctcaaa
gcgggaagagtgcctccaggtgaagactgtcaaggctgagaagcccatggtatgtcattc
actctcctgttctcccagagccaagcactcattaagaaaaacccagatgaacatgtcaag
ggatgacaccatccccctccattgtatctggccactctgacttgagagtcgtgagcccag
tgattgagactgctcactcaaagttaatctgcttagtcaataactttgctcaaagggagt
tgctaagattcttacctgacttataaaactgatccatagctgtaccacttgtggcagaca
gacgtggctgtcagtgtcttcaatgcggctactcagtagaaaatcattccttgagccttt
ctgcaaatacgctttctgtcttccgtgccctgttgaccccaagatgaataagccgaagtc
cttattctttggggttttacagttcagtgggatgtacagattgaaaaacaaatacaattc
agatgatgaggcttaaacaacaagtctgtgaaaagccttctagagaaggagaattggcag
tgtgctccaagggcagaggccccaggacagttcagcactcagggagagccagtggctcct
ggggaatgggagggagacgagaggtatcagttgtgggatttgccagagcgaagggggaga
gggagtagggcaaaggcaagactagggtgtgatcatgggcttaacagctctagtcttaag
gattgcagtacaggtcagggagagtggagacaggcacaagattcgcatgtcaccacaacc
caagataccttctattgcataaaaaatgaggattgtcagagttatttgtagcagtttctc
ttaaaattgacttggtatgtgaatatttataggcaaattatattataaagatagaactca
aacagctgcagaccgaactctatatttccaggtgagaaaattggagtttcttgaggtgaa
tcacggggtcctgttgaggtgaatcacggggtcctgtttcctcaacagatgtcgtgtgct
catggccattaaataccagataccttcacagacatgtattaatgaacattacatttctaa
tataatttcttttaaaacttgtctttaatttggtcatcatgctataaattaaattctctc
ttcctttttcttattaatgcaacacctcttctgtctattgctcccaaatgtcttgttctc
acttcctaaggacagtgggtaataaggtgagggaattttgacttctctattttttttgtt
ttgttttgtttggttttcattttaacatgcaagccttcttcccattttatcttcctttgg
tttctatggcattgtgacatccttggtgagcattgctcagctctgtgccttgaacatagc
atgtgaaaacggggaagttagatgatcattgttacttttgcctgggacttcataatcaat
cacactgggccaaccaagcagttgttctcaaattctagttaattactatcttgactagca
taaattcaagtgtgggactggatatgtactgtgttctttgaggaagacctggataaattt
gttagcaatttaacctccattcagttgagtgcatataagtagtttcctgattgtaagtac
ctgtgccttcttaccattctgtggcatgtgtgtgtgcgtggtcctatacacatatttgtg
tacatacatatttttattattatgttgaagaatgaaacttacccaaagctttaaaaaaaa
ctcccaatacttctggaagagttgatacctcaatattttgcagaggcaaaataattaaga
attttcatactcatgatcggatttacaaatcttccttagctctgcttggttgcccaaggt
tgaagttaatgttccgcgtggcacttgctgagaaagtacgcatttgcttgaattcatatg
ttgtggaagtaataaagctagaagactccccaagagagttacctctacaaacacgttctc
aacagcattgcgcatcccacgtgagaatcactgagtgaatcttttacctgctgttagtgg
ctctagttttttataggaacactggagctggtactgcagaggctcagattagccatctta
ggggtctaaatattgtaactttcagtggccagtgaacttttctaaacaaaacgaaagatg
tgacttcatgtaaacccttacagctttagatagaccaaccagttgtgcagtgtgagaact
atcctgtgcactataggtccgttcacatggtcattcccagactctgagagagccggttac
tgttcattaagccctggctctttgattgagacttgtcagtaggattaagttttcattagt
tacagaattctcttccagcatttatttggttaatattagatcatactgagagggacacac
accaagaggaactgtaaaatcattctacaaactcagggctactatccattgcagcctgtc
ttccctcctgagtgtgacagagcaagatgacttatgttttaccagttgcagcctccttga
ttcagacagggaggaaaacatagaaaacataatttgagaaccaggtctgaatagcctaga
gggctctttgttgggaggagataaagtgttttatgaagcatgtgaatgctgtagttcagc
aactggaactcagttgtaactataagaatcaccaaagcttatgacctcatctttagcttt
gccaggtctttatacttaggtactcactgggatttatactaatttccagtaacaattgat
ccattaggaactgatcccattatatacacagattctgttgtagtgaatggttaagaaatt
tgcccaaaaataatgtcctggagatagaattgaaaatgaggaagtatttctccatagttg
gcatttgaaaccacagggtctcatggctgatagttctgatcacagcacatctagcatcgt
ctaccatccatcacctcccttgtgtatcagcctgattggtgggccattctcattttggcc
caaacatctaccaacacatagtttttcttctcatataacctgttgataccctgaaggttt
tggcttgcatgaactgtcattttggctccctctcttttacccttcctgatgtcatttggt
tcctttctccttgaccccaatagacatctcagccaagccctggtggtcagtcttcatgca
gcagccaacagtcccccatcagcaactattccaacagtgggctcgagcttcctctgactg
atggaggtagtgtagcagacctcagtgccatcgatgaaaccccaatcatggactcgacca
tttccacggcaaccacagcccttgctttgcaagccaggagaaacccggcagggaccaaat
ggatggagcacatcaaacttgaaaggctaaaacaagtgaatggaatgtttccaagactga
accctattctaccctccaaagcccctgcggtatctcctctcataggaaatggtacgtccc
accctagaccatgtgtctgtctgctcaggctatttcttttcctttcagtgtggccagaat
acaccaagcagatctggaacccttggttttatatttgttagtttctttacagatcctaaa
tggaggctagaccgtaacctgtgttgatgttgaaccattcgcactgcttttccagattgc
ctatattttgaaaataatagcagaataatactagaataaaaacttaaaatgagaagaact
cagattttgatgaagaaattataattgcttgaatttgagtggggcaagaaaaccttcagt
agaggcccttgacctgtgaaggctctatgccccaggataggggaatgccagggccaggaa
gcgggagtgggtgggttggggagcagggggatcggggagggcataaggggttttcaagag
aggAAACCAGGAAAGGGGATAACAT
Primer
(+)gaaacacgtgaagactgtgcat
(+)ATGTTATCCCCTTTCCTGGTTT


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