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Mouse element [ mm1936 ]


Position: chr13:15,807,717-15,812,126 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ACATGTGTCCTTGCTTGATTTGaaacattgttgcaaatggagaaatttgcatgtgtgcaa
cttcagagtggccattatgacatcatcagttgtaggctactcttacagccttgcaatatc
taaaccaagtgaggcactttgctcaggagccatttggctttaagcagaggtagggggaat
agtgtggtgatagaataaaacagattaaaatgacctttaatgagatcatctacactgtct
aaaatacttgaaactcaacagttgcaggtccacagacccaggtccacagaccccagctct
ttcgaaaggtcatggtatgataagaaaggacaggtcattttgaatctcctgttaatgacc
taggaagacaaatttcattttttattataatgttaaaagctttttctgtatataatagcc
accggaacattttagggagtctagaatgggcaaatccatggagacaaaatagattggtat
ttgttaacacttaaggccaaggaaatagcaggctgctgattttggagtgctagaatattc
tagtttattacacaacatgaagaatgtcctcagttcgttttttttttttttttttttcaa
cctcagtttcaattcatagagttgaaaacctctgcttggaatttcaattaacatagtaat
taaatttagctatctttcatatacttaagtaaaagaaggcattcattccttttgtaaagt
ttaggccaacctctcctgctgtagagaaatttggtcagtgaatatattgagacagggatg
cacaaatacatagattttcattttttatgaatttaaaacatgtacagacatctgcttatt
ttaggtatggtctagttatttattttttctttgatgagattaagaaatacaggattatat
gagaattgaacatctcaggaaactagaagatgacttgggcaataatgttattaccaggaa
tgaggaacttatttaaatgggttaccttgataatagcacttaattaagattcactcacat
tcaagtcatttttctctataacatgtatgagactcttaggttttgagtatagaagctggc
acagtttcacatatacagaagataggcctgtcctggaaatccaggttcttgtaggcaagt
tagcccatcttaaataaatcctgatacgcacttgcgtttatttattgtcttatttatgac
tgtgaagactttttgctatgttaggtagagctaagaattcagcagggtagatccagacag
caggtctcttacataacagaaaagctgtcgtggcatttctctgtctatgactttgttcat
gatctttcagggcccttgggctgtatagcagtgacctctgaaaggactccccattctaga
tcatacagtttgtattcctcctggagccacatttatgcccatgctccggaccactcatga
gcaggatcttttctagggacccttcatttttggcatcatcttgttaattgcttttattcc
acagaatctcattctttgttttcgctacctagctgaagtgcttcctcataagaaatgctc
cattgagcaagtgtttactatatgggtcatgtgtggttataagcatcttatgtacacgtg
agatggaagttaagcgcagattttattaactgacacacctcccaggattatcccaaccaa
aaaaggagtcctcagttgtctacatctttgggattcatactttatactataaatgattac
atggtctcatttttcctaccagaaaagaagattctgcatacaaaatataagggattacat
aaatgatctttttattgaggttacacatctttgtgtgcaggagtcttgcatatagtagta
ctcatttgatgttcagtgaaaaataaaatttatctgggaatagtagctcaatgctgtaat
cccagcacctgggtggctgatgtgagagaattcacagctagtgtaggctgtggaaaaaga
acttattcctctgtctgataaattgtatagtcaggagaaaatgcatcagttgctttccaa
aggtacctgagtatgcaagtcacaatggcaaccatcatgcctgaggatgaatgtccagga
catgagaagttggccccttagtgtgtctgctatcatcctggcattgtattgctatcacag
gctccatagttgtggttatgtggtttgttttaaagcataaacttcaagaacctgtgttct
tatggggttttgtaggtgacatttaatgtgcatgttcatatacaagggtacatggtcaca
ggtgtgcttgaaaatgctagttctgatgaacttctctgtgctcattgcccatcagctgtg
aactcatttccaggctaatcttaatatgcacatgagtgtgtttataggaagagtagctct
tcctgtccccgtcctgtgccctgtcattgtcctctctccccttgcccacacacctgcatc
aggcactctgctgatggagcagcctgtcccatcagtgccctgagcaagcacagggttgat
atacaaacacccaaaggtaatggcactaactgtcagagccattcttctgtccctaatgca
tgaaatcctgcactctcatttcgtcgtgtatatgcggcaaatcacagagcccctgagtag
acataatttgtagttaatgggaatcaattctatccaactgaatcttacatttgaaggtaa
agtctctcaggataatgttcggaatcttcgcttctctacgttacagaatttcggcatttt
aggttgctctcattctggccttaggcttttagtgaaaaagcatcttttagacatgcattc
tgcaagacagggtgttcagcaaggataagagatatattattttaatcatgcttttcatga
tgatttcttatatactagctcaccttctggtacacagagatggaagtacataatcctctc
atggctttcagcaagggagcatgtccggaacccctacccacaccagaatctgagaataca
tgagtctcttcaataaagtgctgcgatagacagacagacagacagacagacagacagaca
gacagatagatagatagatagatagatagatattctctcatacttctgattacatctaat
gcatgctgcagtgtaaatgccatttaaatagctgtgatattgtttagggaatagcaacaa
gaactatctactcatggttgctacatgtataaggttttcacactacaggtgtgaagtttt
agtgttttcaatctgaagtcagttaagtttgtggatgtcgagcccttagcatcccattat
tatcccattgctactattttggcagacaagaaaacaaaatcaccattctaacattgctga
ttaacaaagggatcagttctgtaatctatatgaataatttgatataaatgcccctactgt
atcaggaggcatggtacacaactcagggagaaaataaaattagcaggaaggaagtagttc
tgccttgtgtagacctggaaagtcagaggaaagcaaattgagagactggttttccataaa
tccatcatgagccttgagggctatatggatagtctgtaatgaggctacaactttagagac
cagagaccttctgagaatttttacatctgaaccccaaacaattgtaaggctacccagcta
cccaaatgagcacttttcattaaacaacatgagaacagctctgggcagcttagttttatt
tcttcttattataatacctttgtacaaatagcacattttcaaagcaaagaattattatat
cgcagaaccaagataataaatttcttcacacatacatctcctgtaagatgtataaaattg
tcctgatatcatcttcttgtaagcctctctccattatcatcatcagtagatggagagcca
tgatacttccactcacagcataaatgcttccaacaatgtaaaggcaatttatacactatt
actacttacagagctctctaaataatacctattaagctagattctatggacactgagcaa
tatcaaataggctttctaagtcattagacctgtgaggtacctaaatgctgtggaagtact
tttgcaagaattagaattgtactgagcaactgcaagtcataatcacttttattgccattc
atcaacaatttctttttgtggaatttgctagaaaccgtatgtatgcaaaatccctggctg
caccaagcgttacacagaccccagctctctccggaaacacgtgaagactgtgcatggccc
tgaggctcatgttaccaagaagcagcgtggggacatgcaccctcggcctccacccccgag
agattccggcagccattcacagtccaggtcccctggccggccaactcagggagcatttgg
tgagcagaAGGAGCTGAGCAACACTACCTC
Primer
(+)ACATGTGTCCTTGCTTGATTTG
(+)gaggtagtgttgctcagctcct


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