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Human element [ hs1935 ]


Position: chr4:185,305,050-185,308,214 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: LOC728175 - IRF2

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GCTGCCAGAACATCTTGGATatcctctccctgatgattcatgtggagagatgtttgggtg
tttagattttaaaatatgcttcccaaccaaaagtgaaacttaaagatgctatcactctgg
agtttttttgcacctgcaaaacaaaaatttgtgtttttaaaattaactgttttcgcgaca
cagtctgttgcatgtgatattggtgtttctccagccaagcatgtaaggggttaactgggc
agcagttgcacaatcccagcacactacattccacagcaccagcaatctctgtctgaacgt
gtttataaagcagatacggggaaactgaccaaacctccaaagggcagtgtgcttacagga
acagaagcacacacactgcttttcttctgaagaaacttggtcagactccagagcaggctg
ttttcagactatgtgaactctgaaatgtgctacatcttgatccttccacggcacaacccg
ggttcttggatagacttaacatttttgctaaaaccagctattaggcctgaccacttcctt
ccttccaggcactattttcggaagcagagacacagtgcctctgcacctgttgttcgtgtg
gccacagaagcaaacctctacaaaaccctcatttgtctgcacagcaggaccagtgatgcc
caagcccagacagggaatgggggtggtaccagtgtcccatggggccagtggggacccaga
ggccagacagcctcacgaaaaagcatctccccctgactcctgccagcttcctgcatctcc
tgacctgaagcttcgcacggccgggctctcctctccaggcctgtggttggacacattcct
aagggggtgaagccaacagtcccagccctgttcttttgacaccgggatggtggggctctg
gggaggaggagatcccagggatgacagcctagtagtacccaaccttgattcacatgctgg
ggtgcaaatgagtgagaagcagcctcaagaagctgatggtgtcacccaactgcccttggg
aggggtccactgcagcctggggacagagggaggtcagagtcacgtcccacctgctctgat
aactctggccccaggcacgtcattgtactgtgggatggagtttcagggtgaggtaggcgg
ctgaacggcaccatgtaaaaaccagtttgtgcctccaaaccaaactggcactcagacatt
agctgtttgacccctgaatgccaatgaactcatcttggctacctgtgtgtaaacctttcc
ctagcttttgtcttttatcaggagaaatctggcagaatagtgggggttctttttttttta
accttttatctgggcttatttgtccaaaactacaatagcagggggcctttaaagcctaat
gaacgcaggttacagagtggcctcaagcagaaggaacgtctcatgttccatctctctgaa
ttaggggcaggaggccagctggggcttaccatctttccattcacatgcaaagcacttcca
aaagcacaagtttgaaaactcagactcctgaaatcaaatcactcatctccttcacttcta
aaatctctgtctcagtagtggttacatgatagtacggtacacttgggatttgggtgggga
aagggtattgttttagggttttgatgtccaaagaatttgtattccatagccatgtgtatt
tcttttttacaaatcctttgaaatagactaaataccacctttggcagtggttcatcaaaa
cacggacaaaacagtacggttgagggtggatttatttagatgtgcaaatggcattccaga
agcccctttcatcgaggtgtgtggatgtgctgggtgcttgcaacctcaaggctgggcaga
aatacatgtccctgaattcacagttcacagctgtacagtgagcccattatcaagggagtg
acccaggtactggctgcagagaatggaaactattgttccaaaggcagttacactgaactt
gaacttgctattaaacgcatacgtgcacacacacacccaagcccatcatcaaagcctatc
agctcacacaaataccaaccagaagcatgcgtccctggcacttcctctaagtgacgacaa
ggtctgaggcttgggtccaggagctgccccaatgcctttgttttccttccccatgtcaac
cccaggcatcctgagactagcttgttttcctgcgttgctggcaagtatcacttagaaaca
atacaggctttctcagaaggattttaaacatgattctgtttttcatggccttattggcaa
tggagtatcatctctggaacttaaatggtgcatttccaagtcctgaattttcttccactt
gatgggccttgggaagtctagttacgctacagaagcaaggggagggcagcaggaatggca
ttcgggaccgagatgcaggaagaagccctgagtctgtgttgggaagaaggaagggggagg
agacctgagctaccttaaaccctttgataaccaggccacgtgactcagggcaaccttccg
ttgctgttttgttaatttatttaaaataggatgactcagtaaaacattttagatgtaagt
ctcaaagaactgaacttctccattcaggacctgggggaagagcaggtcttaactgaaaag
tcgggtgccaaggagccagggagcatctgtttcttcctgataactccccttccactgaga
aactgagacagtcaacgaaagtgctccttccagaagcagccccgcctctgtgtgtggcat
ttcaactacaacgcatccgccaggaaaatgctccagttgatttccattcagggctggata
actttatgaccgctaattatatctgcagccacacatggagataggcataaaaatagcctt
ttgtcctttcattaaaggaacctcttcaaatattaacttagcaatctcctccacaacccc
ccagaggtagtaggcgggtagcaaagttttcatattctgattttacagagtaagatactg
gggatgcaggggaggctggtgctgtggctttctccaggccaagactataccttcaaacac
caagtggctgataaagactggtgttcttgaagtcaccccttttattccacaagacagacc
ccaagttttgagggcacggtcTATGTGTAAGGCCTCGGGTCctaG
Primer
(+)GCTGCCAGAACATCTTGGAT
(+)caccGACCCGAGGCCTTACACATA


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