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Human element [ hs1934 ]


Position: chr20:55,734,523-55,737,597 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: TFAP2C - BMP7

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ACTCTGTGGCAGGACCAAATatttatttttgattctatcacaccttgcacaaaagacttt
gcaggtgcgatggagttcaggatcttgagatgagcagactatcctgaaatatgtgggtga
gccccatgtcatcacagggtttccgtgagacggtcagagagagagatgacaagactgttg
ggagcagaggtctgaatgagagcgagtggggaatgcttcagtgctggctgtgaagatgga
gggagcgactgtgagctaaagagtgggggtgcccaaaaggctggacaaggcaaggttcct
cggagcttcccgaataagccagctcttccgagacgtctgaccttaaaagaataaatatgt
gtcattctaaggcactaagtctgcagtcatgtattacagcagtcataggaaatgaagacc
ggggtggagggggcagacctaatgccagcaggagcgggggtgtgtcctgcatggcctttc
tggtgattttacccgagtgaggggggagcccttggagggctttaagcagaggaccctaaa
tgtcatcagatcacgatggcagcttcaataagccagctctgtgataaatgctctgctgac
atcaacttaatgaatgaccccagcaacctagaaggttatcatgactgtgcccattttaca
gaagaggaaactaaggcttcaaggagctacgtgatgtgcccgtggtcacgcagctcagaa
aagctccaaattgttcctttaaaaagacacacaaggtcctttgtccggtggccgtatttg
ttacaggagtttcccttcaataaattcgcagctctccatgccccttcctagcctcccgca
ggtccctgcggctctcataaggaggcagacgctggcagaccataggctcatgatggccag
cccagcaggctggatgtcactggggtctccaggaggcaggacagggctcaaccccagctc
cttcacttgtccacctgaagatccttgagtaagtggaccccaaccctcgaaacccccggc
ttcgccccaggcctcaggctccagcctcattgtctgactccagcttttctgatgcagtgg
ttctcaactgcgggtaactgtgtcccccaggggacacgtggcaatgtctgggggatgtta
ctggtatctggcaggtagaagccagggctgctgctgaacactttacaatgcacaggatgg
ccccacacaaacagtgctccaaaccctaacgtcactagtggcaaggctgacttctcctct
ccagcttcactgcctttccccaggaagggtctcctctggctcttagcctcagtgtctccc
tcatccctttaggcttgggggcattttacatggattccatgcactccgccttacacaact
ttgtacacgtcccagccccttcccttccaccttccgccttcagttggtcctaatttgagc
caattttgtttcctacagggattctttgttaatccttttgttttgttttgtttttgtttt
tttgagacagggtcttaccttgttgcccaggctggagtgcagtggcataatcacatttca
ctgcagccttgaggaccaatgatccttacctctcagcctcccaagtggaggggattacag
atacatgccaccacactcggctaacctttgtattttttgtagaatggggtttcactatgt
tgcccaggctactttgtttttgttttggttttggttttggtttttgagagagtttcgctc
ttgttgtccaggctggagtgcaatggcgcaatcttggctcattgattgcaacctccgcct
cccggattcaagagattctcgtgcctcatcctcccgagtagctgggattacaggcatgca
ccacaatacccagctaatttttatatttttagcagagacggggtttcaccatgttggcca
ggctggtctcaaactcctgacctcaggtgatctgcccgcctcagcctcccaaagtgctgg
gattactggcgtaagccaccttgcccagcctactttgttaatcttctacctgacacctgc
cattgcctgagggtttccttgatgatgcactcaggagcctgtccaggcagggggacatgt
caccccagagcccggagcctccttcctcctgaccccagagcctgggcttcctccccactg
actccagagcccgggcacccctccctcctgaccccagcatatccctctgcccagaacact
gcctgcagctcgcaggtgctcaagacggacttgttgaatgatgaacgtggcagacgccga
attggactctgagtccttgctctgtcctttgggcacaggaccagctagagaatctgcgcg
gcccagggcaaaatgaaaatgcggggcccttgttcaaaaggtatgaataaattcacgaca
gcaagaacaaaagcatgaaaccaaactccaggccctcctgcgcacagaacctgagggact
cttggccggccagtagttcgtacctgtcttccaactcaggctgccggtgtgggttggtga
tctgtggacaccctcagtcctcacaccagtctccaagccactcagagctaggcaagctct
gagccttgcattctgcagaatcccgggcctaagatccggccccatctcgtccaccatgag
aaccgtgtctgagagggacggggagaagcaccgagactcagtcaagggaccgtggctctt
ccagcccaggcgcatgctgcctccatccagatggctgcagccactccaaagctttggaga
gttctgtgtttttcctcttctatttttatttcctcaaatccgagaccaagagagatcagt
gccagagtcctggaggggtctgagccaggaggaattgatccacaggcaagaagaaaaaca
tgtccgaaggaggtcactgtgagtgtccttgtcagggatagacgggcaccaaccccagtg
tgggctgggccctgacaagggctgggtcctgtgagggagggttggtcctgccatcagatg
ccccagactagggctggccagggccccctctgcactgccccaccctggaggaGTTGTTTC
CACTGACGCTTGtgt
Primer
(+)ACTCTGTGGCAGGACCAAAT
(+)cacCAAGCGTCAGTGGAAACAAC


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