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Mouse element [ mm1933 ]


Position: chr13:15,789,208-15,794,355 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GAACAGCCCCAAAATAGACAAGctgtaaattgtggctgctacgtggtggatgagaggagg
aaggaaactgatagagtttgagttaagctagcatgaaactcggccgcatggtgaggagaa
gagcatcacagatgtggtaaggaagcacagactaccaggcaaagctgctacctgggctct
ggccaacatccaaaagaaaaatacagaagacacaaaaaggacaaggttacaactgagtct
cagcaggtttgagaggaaaagtgcattatttccttaaagagatgatggtcccttctctgt
cttttgcatgtataaatcgaacccacctttcattttttattaagtaattaatttgtgtat
ttacatcccagacgctgcccccttccaatcaaccttcacataaaccctctcctcgatccc
cctccccttcaatatccccccaccctgtcccatcaatctgcaggattaggctacatgcat
gccagggaccatagtccagcctctgtatgctccttgattggctcagtccctgagagctct
caggaattagattagttgacactgttagtcttcctgtgaggtacaaacctgcctttctaa
gagatgtttgttgttgtttatttgattggttggttggatggttggttagctagtttttga
ctaagtgattgaccagatcaactagattaactcttatgggaggaggggaaacctgcatgt
ctccccagaggtagattctgttcttttggctaggaagcaatggcttcgtcttaatggact
tccattgttactgtaaaataatgaaatcatagcaagcacctttctctttcccttgctcct
tttcatcctttatagttacattgttgccttctttttgtctatacatatatatacatatat
atgtatatatgtgtatatatatatatatatatatatatatttccccccataggtcagtga
aagaaacaaaggatagtttcaaattctagagaaccctttggctcaagtgagcagactaca
ctttccgcacactctcatgtctgtggggagagagagagagagtttaggactgggctctgt
gccagaagctcaccctgtacactaccagtaactttctcaacttgtctcctgtgggaggta
agaaatgaagaggaagcaaccagggaaagactgtcagtgtaacctacatgccagctccct
agaaactgagatgaaaaagcaatggtaagaatgactacgaatcggctgccatactcccat
ggcctgtacagctgatgggcatccatcattgcgggtaggaagggcctagataccagaggg
ctggcagccaggttgctgcctttctatggcagaatattttcttaatgactgtattatgtt
tgtgctatgtgataaatgaaataatggagaggatagtttgtaatctaaattaagattaaa
aaaacaatgataaaagattatgtcctataagattcaagcaaccaagttcagttgtctctt
atctggtttattttgtaatgcacttactagagaacattgtaattcaccaatatcaaacca
catcttattaattttctgtttgcgtgcaatgtggagaccattatggaagccgtctatatt
ttgaatgcatgtgcttgaagggtcaaagaaaagactccagtgaaagttttagaacgtcga
atgctttactagccaaatgttcctatgaaaatatgcttgtaaaagtaagttttatgggaa
cattctccaaactagaaacatatttctaggaataaatggggatggacttcttattttgtt
gacgaggtgattgcaaaataaaatgaaacaaaaacaggaatggctgcaaatgaagaagtc
agctaaccttgggaatgtccctgctacatgagggttgaaatgacgagctccaggcaggcc
gccttgccagttctccggggtaaaccaccactctgcacagcccacagccttcactatttt
ttttttcttttttccgatttccaagtttcagccttggccatttgcagctacagcgttcct
atgtaaagcactttactcttctatttctccaatggaaatttatgtgaccaaccttacttc
ctgatttctctttcttcaaacactttagttatggtgaggcaaaatttccatgacattaat
gagatttccacaagcaaattaaagagaaaaatatgccctttggtcttttgtatttaacag
tactgcaaggagaagaagtcttggagtaaagcgtgagccggagcaatagccaggggacaa
tgccagggtagcttcatgcaaggaactaggcttttttctctcctccatctaaagctttta
aattatttcaagacaaacttactataaaacatcagataatttgctctctgctgccagctg
agcataattctaacagtacagattgccacttcatttcaaagtccttaacttcaaatcatg
ttaacattactttactgggcaaaaaataaattttagcattcttttcattggtaacaaatg
ggaactaagtaaggcacgcaaattgtgtctttctgaatcaaagattttattctacacttg
caatgctaaaggtggcttttatgggaagggcctaagggtgtctcttatggaagccttcag
attgttgagaggaggacaatcacaagagattgttttcctttctctggcttctggatcccc
agcatacaactctaaggcaaaacagactggagtgctagggctggggccacgtttgttcca
acagcacagcacattcctaaagcaaatagtgacctggtttttgctatgtgctagatattg
tttcagacacccttgttcttcattttggttatcagatgatagaaacactgtaccccaata
aattagaataaataataaattagtgtcctcaggaatctcacattaagaagaaaaaaaagc
ataaagtctgggccaaccagaaaacaaagagtattccaagttgtcagacaagtatgctga
agggtaaaacagaaacacatatggatcagtggtggataggaccttattcactagaacctg
tttagttgatcagtctaactgtggccttctacataaatgttcatctcaagtcaagacctg
aaggtagactcaactcatggatcacagtacttttttccctcttcccagagtggccatatg
aagtaaatcttctttttctgcctttcctacttaatttggctcttgcaattggcttgctga
gagcaggtggcggaacctggcttgttggtatataagtcgtggccctgaatttcgtagcag
ttggaatacatcatttaaacaaaacagctagatttttttttttattatttacaaaatcca
cattctggtaagggtcagcagtgtaataagtattaagttcattgagtaaatcaagctgta
atgcgttacaagttatagagaccgttggtaaatagagagcagagtaggattggactgcag
tggagtaatcagaaccagaatcaagtatgagaagtctgctaagagtatttgtttacctgg
gacctgagtgtcctagagtagtcgtcacctctacagcttcccctatgctacctcagtagc
aaatacatgcacactcagatgcacactcacaggcgcacactcacagtcactactcttgac
atcacttttcactatactcttgatgaccttgagcctctatctctaatcctttcttctata
aaggtgttttgtaacctgtgagtcttaatccctttgagggtcacataccaggttccctga
acatcagatatttacattatgattcacaacagtaggaaaattatagttatgaagtagcaa
caaaatgatttcatggttggggtctccagaacatcaggaactgcattaaaggctcgaagc
attaggaaagctgagaaccactgctctgtgatgttcttctctgtttgctctggattcatc
tcagttgtgtaaccttcctttcttccttcttggtttgtttgttcgtttgtctgttgtttt
tagcacatttcccattttattttatttgttcctacatgtttcaagtattaccttctcaga
aaaaaaaaaaaatgcttcgctcacttttattatccacaggacagtttgtatatatagact
gtattagttagggttctttagagtcacagaacttatggatagtctctatatagtaaagga
atttattgataacttacagtctgcagtccaattcccaacaatggttcagtgaatggctgt
gaattgaagtccaaagatctagcagttactcagtcccacacagcaagcaggcgagggagc
aagagctagactcccttcttccaatgtccttatattgtctccagcagaaggtatagccca
gatcaaaggtgtgttccaccacacaccttttaatcccagatgaccttgaactcggagatt
taatcttctggaatccatagccactatgcctcaagatctccataccaagatccagatcag
aaacttctatctccaagcctccagataagggtcactggtgagccttccaattctggattg
tagttcattccaaatatagtcaagttgacaaccaggaatagccactacatagactaatgg
ctaaacttgcattcttcctgtaaacgtctatgaaggtggcacttaatagtacataaggaa
tgttataagtcttcctgtatatagcagcactaacagattgaaacattcaagagaagcact
gctcacgagggtggctggtgactgagaaaatgcttaggttaatatctctccatggtggaa
agcatctgtggcacagtgtcccgcgggctccccaacctcttgatttaatgatatgaacct
gagtagccccgctcagtgagcatactcatttctcatgggaggaggctagggaagagggaa
gaagccctctgagcaaaggctgatttttagacagtatccctgcctgtgtctcagaggcca
gtttctgagatgcattggacatgtcctatgtcatcatgccacttcagtacttagcaaata
actgtcgtgcctcaaataaacctggagtgagtagtaaaaactgagtcaacacagtgggaa
agatgggcaggtttcaaatggatttcCCTGATTTTGTGTCTCCTTTCC
Primer
(+)GAACAGCCCCAAAATAGACAAG
(+)ggaaaggagacacaaaatcagg


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