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Mouse element [ mm1931 ]


Position: chr13:15,766,019-15,770,660 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGACTCCATGTGGGCTGTATCTtgggtattctgagctttggggctgatacccacgtatca
gagagtacacaccatgtgtgttcttttatgtctgtcttacctcactcaggatgttacttt
ttagtaccatccatttgcctgcaaatttcatgaagtcattggtttttatagttgatagac
tccattgtgtaaatgtaccacattttatatcagcttgttgacctttttgagttctgtgga
ctgtatcttggttattctgttcttgtttgtttgtttgtttgtttgtttgtttggctaaca
actgttttttaacttgaccctctgccctatattactaggcaatgaaatacccacctaaac
tagctagtgtgattctcaatcatggaaataaaagtataccatctgaatcatattcagata
atttctagaaaactgcacacagtctagcagctcacattctggtatgctggcttacagtta
ttgggtgtgttaaagaaagccaaagccctgaagagaagtctcttgtaagctgtttacatg
cctgttccaatgaggaagagacatgcatttgtttcgttttattatatccccagtagcttc
tgatctcaagactctccattcctattcgcctctgtgttattacgagcaattcttagtgag
ttaagcagaggaggttgtgctgttcatacaggagggcccttgagtacctgggaaagaacg
ttagtgctctgagatgtttgctgctcctcctgtctcatagccacctccactccccttttt
tcctttactttttaatgttgatttaccctactctagactttacagatggaaacttctgtt
ggaaatgtttttagaaatcagtcttataccccgaggattttttaataacttaaatgttat
gtcctgtgagcctttcaaaaattattaagcctatgtattcataatatatttagaatactc
caaaagaggttacagtgtgggtaagagtctcaaattatgggagttccatatatatagtct
tacacaattctttctatcacttttccttttcaaagtacaattcttattggaatgtgcctc
ggccttgcttttgtatttattcaaacacagtcagaattagactttagcgctactgaattt
gttctcatctgttctatgtataataatgttgggtttttctcaagcgacatgacaaaccag
agttaaccccttatagagtactgattacagaccaaagaaaattaatccacgagtctgtct
tataaccaggtgaggttcttggggccactcactgacaggggcctaggtgaaagggtaatt
gcaggagcatggttgactaaagagattggcatcactaaaaacatagggtggcaactcaga
ttgcatccttggctctgagtacaaagctcagccagacagtctcttcctagcagctttgga
aggggccatgttcataccacacctttcactggctccctgggtctttctaagtttcattta
gttcttgagtatgcaccttcctctttgtctcagggaggaatgtttcagttctgagcacat
agccatccaacaagcatatgcagtcactttggtgccctctttctacatttatttctgttg
tttccctttgtgtgttcatgtgatgcatgcccatgtgtgcatgtgtgtggaggccagaca
tcaaagtcaaacttggatatcatccaccagctaggctaggctggctgacctgtaagatcc
taaagttccaccaatcacttccccttagtgttgaaattgcaagcaagtatcacttcactg
agttttttacatgggttctggagagtgaactcttgggcttctcacgtttgcatggtgatg
actcgctggagctgctcctgaacccttcgatgcctccccttttgtgcctccctttctccc
tcctaagtttcttcctatcctcattttcttaataattcccttctgtcattttctgtcctc
tagacagagctaggctttctctggtcctactagtgtacctctaatggctaactgcccttc
attttcctcctttcttttctggatcttaggataaaaatgaatgtataacagttttgtttt
gaggtagattagagataagaacgttttgtagactgcctctgaaacccctgtgacacttct
gagcatcataaaagaactgatgtcaccatcacttgtacatccaatgtgctcttatcatca
gggatctctgaaaaaaaatcagaaacttagaaactgagaagtgaaagatttaaatagctt
ttttttttccaggcagagtctcaccatgtagcctaggctggtcccaaactcagacctcta
tctgccttggcctcctgaatactaggattaaggatccaggtatctctagatgctgagaaa
gtctgaccagcactaggtagttgtttacttggcagcccacttctggggtcctgcaagtgt
tagagatgtgttccctaacacatggtgagccatgtttctttggattagcatttcctggtt
tggaccctaacctggacattgaggagttttagtcacttttggattttctcatgaccaatc
ctgaaaatttatgtaagaatacagatgaatgctcacatatagcatatgtaaaggaataat
gaagctaacaagtttttaagtaaaacaatttatactctgaatttgtctgttaagctgcca
tgacgatggaggccagaactcatagcacatttgtcttcttcccaaagttctatacaaaag
gctaggaatcacctcgtgttctaaaccatattgcactctgaaaagttttctacattctgg
cttctttacacccttcacggtcctccagtcaccagtccttggtctttggacacacctgat
gcagaccatggcagttggctttctgttctgtttaatgaggaactcccagtctcaggtgtc
tgagggtgtgtctctgttcctgccctttctgtctgcttggttttagtgaggttcatggct
agcctaggtgcaatctgcattgcagctgacaactaatgcttggctgctgtgctgtagcaa
ggaaggaggcaggttgtgccagatggtaattagtattggcttctactcaatgctgcacta
actctaatgagctgtcagctgacctgcccagggtgctaagtttgttttctacccaacata
cctcctaccccagcaggagactcagattagtgctcaggcttggacaggggcatttcttgg
cagaggctaatgatagaaatgctctgtagattttgaatacgaagtttcctcaggtcctat
ctgagacaggatccttgagctagcctgcacctccatgcattgtcctccctcgggtcctgg
tcacaaatgatgctcactagtacagtggtgattagatgcctctgagtcccaccctaaacc
agttccgagagactgggacccagtaccttggacattccagggcatacaaatctgagaaca
cctgcccttactaggtctctaaactcaggtaaggatcgagaaccacaggcacttactatc
aggcctcaaggctgtctcttggcaaacttgtgttctgagaactgatggcaaagctattgt
agcaaaatctgtctgctatataattcagagtcccaaccacttaacagagtctccctcccc
ctccccctccccctgcccctccccgtctccctctccagtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgttttgcaggaattgaacctaggacctccagtatgacaggcgcatgcat
tgtacttattacagagtttcatctatgagtaaagggtgagacactaagttccttgtggct
aaaaacaaacaaaacaacagcaacagtgacaaaacacacacaatttagttctaagagatg
tcaccatttcactgggatgaccatgctgaacttgggattgtgacatgagaatgacctaaa
gtatcctccctcctgttccaaacactccctattcttccactttccttcttcaacttttct
tacaaaatggaatccccttcctgattctggctttggactttaaaactagagatgattagg
aaagataatttgaaaagaaatctagatccatagaaaataaatattagtatttgactctat
cctttctgccctacacagtggctcttggaaggtcatggtacaggagtaaatggacagaac
aaggcgtgtactggctagactctcgccctttttctaaccattggacattggctgcttccc
aatgcatgcctaagagtagctcttttctctctccacagcctccgagaccctgaggaggct
agtcctagaggctctgattgtagcttccgctctcaacaaccattggaaatcacctgtagg
gcatagtttaagactctggtataaatatgaaatgcttctcctgggggtgtcttcttagct
ttttagcaccatctgcctgtatgtcccagaaagaagccatgtagtggccattcttgggtc
attcctgctgtttctctggtggagggcatgttaatgtagcagatacttagagatatgttg
gagaccttggtgttcaggatctgacttgggttcagagctctggatacccctggagtgctc
CATTCCATCACACTCGTGACTT
Primer
(+)agactccatgtgggctgtatct
(+)AAGTCACGAGTGTGATGGAATG


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