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Mouse element [ mm1929 ]


Position: chr13:15,746,298-15,751,079 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTCTTTCCTGCTGAGGCTTAACtgcctttttctattaaatgtgccttaggaatttttatg
ggtggaagtagaagtttttattttgtttgttctcaagtataaccacatgggtgcatatgt
atgtctatatctattcatatgaatttaatagaagctgtgaggccattctctgcaaaactg
gaaagattgttctttgaaaggcagctgttgtctagtaaatgaccttgttagcccagagcc
caaagcgtgactaggaaatctggggtgattagaaggcagttcctctaaggtcagttttca
agttgtgctgtctgccgtccccatgctgcttcattttacatccaagacgtatctggttca
tgagcaaaagatttaggagggcagaagccagaaagcaagcacagcccttcgttcttctgc
cttagagatctgggcttatccgtgtcccagtttatagtaggactctgttcctgttcagag
tgttttgacctgaaccaagtgcccacatttttaatcctcatactctggggtggatctctg
taagatcagtccaacctgatctacataaagaactttgagaccttgtctcaaaaaatacat
ccacttcacttctaagaattaactggcatggcaaattaggaaatatgtatttattgatag
tcattaaggaaagtagagtttacatttaaagcaaggcattcccttagactccagaggaat
cagctattgttggcacaatccactggatttaggaacggtgcctctgagacttgctgtgtc
tttttaccttccacttcggggctctcatgtgtaacctcagtctctcattagccaccttcc
taaccaactctgctcagctcactctcaatcactgagagatttcagagatgaactcggaaa
cctaggaggctttctgctgcatcctcgtagatcaaaggtgtggcatacttaactgcctgg
ctgcccgtaaccacagctttgtggtggtttgacacaagaaagaaagaacaccacctctgg
ccgccattttatatacatagggaagggcaattatgtggttactatagggaaaaactatta
ttttcagggaaaacactgctttttattagttagcacacaaatgagttttcagtatattat
ttcacatgactgtgctatactccaacttttccagttcccatccagtggctgagttctgta
gcttcctcctcgctttcattttcatgtaaaaaacaatcacttcttccagtgggaaggcct
gcatcagtccaaagcctgtggctttattgatagcacaattactaagaaatttagcatcac
ttttcctaccgcccgccatacataaaattcctcacaactttaaaaatacattttagggtc
ttcatgtaagctattttcatgggagttttccatgtgatttgaatatgatgactttgaaat
tcctgttaatagtaaagttgaataaatgtttaataatgtatttctacagtatgaacgttc
agtgtcccacttatatattaatctgttgttgtaagaaataaacagaaatgtgatttactg
actgctcaaagggagtgtgtgtgtgtctgttgtctgtttgggtgtgtgtatgtgtgtgga
ctcataacttattgatgtgacaaataatgtgcgtaataacatgactgcattttgttttac
caaattgattataattactaaatagcctcccagctacagatagggagacatgtagataga
aagtactcagttcaaatttctggaattaatgaatgagatgcattgtatataactaatggc
agttaattaactgtcatttaattgttttatgtatcttctttctgctaacatctccaattt
tacccatttggggacagttggtgagattctaacagacttccatgcaggaaactgctgtat
tatttaccacaatatgaagaaacagcccaaattttttttggggggggggatgaaaattga
acctaaggccccccaacgtgctaagcatgcactctatccatgaagtgaacattgtaaaaa
aaatcttaatttaaaaattttgttgataaaatatacatacaagctagaaatttctgtctc
agattttgaaaatcttatttagttttttaaattgtataaatgagtgtttatctgcatgca
tgtatgtgcatcacatgtgtgcttggtgcccactgaggccaaaagaggatatcagattct
ctggaattaaaatgatagttttgagctaccgtgtgaggctaagtacttagtcccagtcct
ctgtaagagcagtgagtgctcttaactactgagccatctttctgccttggaagtcttgtt
tttaagtctttgggaaaatgagctgctgttcacatagaagtgtgagagagggggacctga
ctgagcagttctgacccagctgtgctcaggattctgcagggaagccatgggtctaaggcc
ctgttaaacaaatactccagtaaccataaattggtcctgattagtcaacatctaaaagcc
aaattttctacccttttactcttggaaaagtaaagacaagtcggggcttctgttagttat
tctggtgatccagccagtgtcaaggaattctagtgcctagcttttgcaagtgtttgtgtt
ggagatgttttgccagtgtgagttaacctactcatatctgggaagaaggaatctctgttg
aggaattgcctccatgaggttggctatggggctttttttttttttttaaatcaatgatga
tctgggtgggcccagcccactgtggatggtaacagtcctgggcagatggtcctgggttct
ataagaaatttcaataatattgatactttgtaaagaattatagaatgagtatatgcagta
ttttgcaagggcttctgaggcatactctttaagtggaattaacctgttctttctaatttt
gccctttgtaatcaacaaagcctctgttgtgctaccatattgtgagaagcgaagttaaac
gttagctttgatgccttaatactgtttgatacatatgctgtctgtagttttcagaggaat
actttttctcaatacagcttttgactttgggtttccctccctccctccctccctccctcc
ctccctccctccctccctccctccctcccttctttctgatggcatcctaggtatgatggg
cagaataatagcccccaaagatgcccatgttcgaaacccttgaacctatgaacaagttac
cttatatgcaggtgtggttaagctgaagatcttgattttagtttgagttatctgtgctac
taaattaatgaccagactcctgtgagagaatgccagaaaatcagtcaaaagggagatcca
gagtgagatggcaactggagccagggaatgtgagcagcctctgatagcatggaagagcca
ggaaaggcaggagctcacggcttcgtgcttaattctagaggcaaagggatctgagtaggg
gtcacaggaagttctgctctactttgtgaactactactcgttagtagtcctgattcccaa
acatctactctgtttttaaggccccaattctgatgtcacttgcagcttaagtatcagtgg
cctcttcctaagtttccttccttcagcctgctgaatagttcaggcccgtgagaaactgaa
aattgtatagaggttaatgcagggtctgtggacgatctaattatccctgaagtggggtct
tcaggttttatttctttaatgagtagactaaggtacttacacttggtaatacacattcac
ccaaaggaggtggaggtgctaaatcagtgtgggttttgatgaatggcttgtacactgaaa
aataaattggacaaactggcacagagctcagtgaacatgaaatcagctattagaagaaag
cttgtgaacaaattctgaggtagatatgcatcttttgattaatgccctatcaatcatcca
cacagctaccttaggtgagtgttgctgtaatccttcatggttgcttacagaaatacaggc
agaaagtatagcactgtagaatagatatcactacttattctaacttactgtgaacaggca
cagtttttaccatgtttctgctttcctttattcaggaaatacaatgtaaaatgaaaggca
agaccctcaaagcctggtggatttctcttagggtgttcttaatggtattcacttttaaat
gggcaagctattgtaacaggaaactctctgtaggaataatagtaatgaattcttattgaa
gctgctcttttatgggttatagtcaaatagacaaaaatgtaaagtgtgttaatgaaggga
gtatatctctggaattattactgaaagttgttgaaatggtttgaattttgttattgtaat
tattttattctcagttaatgtgcttagcagcaatagtaattaacccaccagattggaaat
ttgcatactttctacctttaatatgagaaacactggttctttctggctaacattatagtt
ttgtgtgtgtgtgtgtgtgtgtgtgtgtatgcagtacatttattatcaataatgttgtat
agaagagaattttccatggatagttattagttctccgtgtatttatatgccactggaaag
tcctctacagtctgtcattgcttttagaggatttgattcctaaactgtgctcacagaaaa
cttctggacattggccactggcctgagtatcttgagataaaggtagcacttcctggggac
agactgtgacctggaaaataTGTGGCAGAATAAAGTGGTGAC
Primer
(+)TTCTTTCCTGCTGAGGCTTAAC
(+)gtcaccactttattctgccaca


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