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Mouse element [ mm1928 ]


Position: chr13:15,741,647-15,746,840 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ATGAGCCTTTCATGGTGACTTTacatgtttgggaaacttcaacagttcagaaaaatgcaa
taagtaatactactgtctccatgtttattaagaataaccccttagaaggtggagaaagta
gacactatagccaaaaggacggagcggaagtcatgaccgcacaacaaatccccatgtcag
gagggtgcacgtttcagacgtacttgacggtacagacctttgaatccacggtggatcaga
aagctaacctcagagatttgcaagagagcattgatactttgattggcaatctggaacgtg
agctcaacaaaaccaagctgaacatgagtgtttgagatggacggcttattttatttgtga
tgatgtcatcaagtttcatgtcaatcctttttctggggaaatatatatatataccttaag
ttaattcctaataagttcatgtcattcagttataaacactattcattaatatggttattt
tacttgtgaactgagctgttctgggcataaaggtaaccagaccttgagagatattttaat
aaaccttgccagttgtatggaggagacatgcagatgtttgtaagggtcgggtacgttatt
accccgacaaggcttcggcgagaatgttcttctgtacgtggagacggatgttctctgcag
aggacactgcagctggactgatttgcagtcagagtccctgtgcaatgtcatttggtcata
tttcatttgcaatatgaatgctgctgctataagaaaaaattttataaatgtaaaattata
caggtattaatgtattttgtattaacatttcataattatttaagcttataaaaattaaat
atttttatggttctgagaatatatgtttataacttaattatgcgtataggttttagaatg
agggaaggggttggctacagcattccaaatattttaaaaataaggccaaagttattagct
taaaaatgtctttttcagggaaagaatgtttaagttaaaagataagttacataaagacca
cttgaataaaaacgcaccagaactatttgagtagaagcaattgcctttctgtttttgctt
tgtagacacagtctccctgtggaaagttgtagtcttttagcttcataagggatcaagtga
ccagatgcctgcacattttagtgacttaaaatgactccacctgctctgtgcatctctgtc
tcctgtgatgctctaagtatttgtttatagaggtatacttaacatgctgacttcagtaac
tgcccttgtttctaaggaagtcatcttgccagaatgctacacgttacaaaatttttaaat
gtattaaaaaaaacttttatacttacagaatgtgtaattttacaagtataaatgaatatg
aattactaagtataaagtgtgacagccataaaaaacaaccggtttctcactatttttcta
aatattaaggtacttctatgcaatacagataacacccatgtaatttgaaagcccactagt
atgaagaaaaataactacttttatatgagactttcatgttttaaaacattgtgtaacaaa
tgtaaccagaggtgatgctggtatgtatcatgggttaacaaagtattttcaaatgttttc
tagagaaagtacccgtgctttttgtttgtttgattgctatgtcatgtataatacataaat
aagtagtataggggtggaagtggtttattaaaatagtataacagtgccatgctattgtaa
aaaataagaaaaagaaaaaaaataataactaatacccttgttccactaaaacatttttca
gtgcagttttgatgttttgttttgttttttagttaaattgtcagcatttcttattggcag
gcaagttagtagacccttgatgtcctgacttaaagttatcatttcactaaaagtggaaga
agagattcactttaaagaccagtatggtctcaaaagatccagtggcagtcaggtgaccta
ggactatctcgtactcattttctttctttccttgagtattttcatgcatatcctctctgt
cagtgggtcatatcagtctttgatatgcattcatagtatgctaagaacatttctcacttt
ttttttttacatagaaggtaatccagtatatgatgagcttccatgtaccattataataca
gtaaatatagtaatggtcatgtcatctccacttgccagggaaactttggtatattgttgt
ccctagacctcaataaatcagctcagcaatcatcaattatggaccaggaaatggcaggga
aaggaacgattcttgtggataccctgagggcagaagctgatctgaaaaaatgagcagtgc
aaaaaaaaaacaaaaaaactgagtaggaagtacatttgatgtctgagtttaactgggtaa
gcatatggacaggcaagaagcacaaggaaggaagaaggcacaaggaaggaggacactggc
caatttactgtgctgggtgaatattggtgccaccagctttgcagtctcctgcccattact
ttaccccaaaacaagcctgacttctacactcatcattttgcaatgtctacctcattgtta
atgttggcagtgcatagggaattatacacatttatttgttctgctattgtcttccccaga
tattataccatcatagcaaaagaaggcatttcaaaagatccttatggatgttcaaatgta
aatgggatggagaaatgattagtaaatggattctctgtagatcaagtatagctttttcat
tataaatttagtgataaatgacgagggtttcctcgttggctgtttaagatctggcatggt
taggaaaatcatctcgtgaaaattgtattccttgttctatctcccaaattccccagtgag
ttgtttacctctccagcttcacaggcgttggagttttcctgttgtctgtcagacaagtat
ggcctggtggctgttgtgtcctctgtcctctctttttttgtgccatcatcctctctgtgt
aagaattctgtggaagaagtaagtcttttccatgtccatgcatgctgcctggtggaaagg
aggaagcagtgtgttccacagctctctcgctctgtgctggtaatggaagtgaatgtctca
cttacactagagaagcaacacatacacacagatgaattaaatggactggaagtagagaac
cacaatgccagattaccgttatatttaaaaatctctgatcccatcttctaaaaattctgt
ggtgtcctttttacctccttaatattagtaaagtagttgtactggctagttctgtgacaa
cttgacacaggctggagttattacagaataagtagcttcagttagggaagtgcctccatg
agatccagctgtggggcattttctcaattagtgatcaaggggggaggtccccttgtgggt
gggaccatctctgggctggtagtctcagttctataagagagcaggctgagcaagccaagg
gaaacaagccagtaagtaacatccctccatggcctcagcatcagctcctgcttcctgacc
tgcttgagttccagtcctgacttcctttggtgatgaacagcagtatggaagtgtaaactg
aataaaccctttcctccccaacttgcttcttggtcatgatgtttgtgcaggaatagaaac
cttgactaagatagtagttaatagtatctttttttaaagataattttcttcagattattt
aatccttaaacatttgaatgagtttaactacaagctaggtgtgaaggctagacaaagagt
aaatgagcctttcaccttcaaggaactttcaggaagaaatgcctcaaagcagacatgagt
aacggagcagctggtgggacaagcttattgattgctggtcattgctgcagaaaaaaaaaa
aataacccgggtcgcaggaagctgagacctgtaagataaagggaagcaacataggcaaca
ctttctgtgaccacctaagagcagtgataagcagatagctctaatgaagggaagagcagg
gcatttgaacaaacagcattggaccagaagactagaagagagtaagctatcggcaagtca
gctagggtgcaagtttggggacattgacagagcaagcttttgcaatgtctgtgactgatg
ccataagaccaatggaaagctttgaggaggctgtttaatactaaggctgtgaagatgtgc
tcagaggtgggctgtcacaagcgtgtaaccaccacagtgtcagtctgctgggtcctctga
ccttccttctgttcaccaggttcctgttcatcaggatgaactgcctctgaaacccttgag
tggctgaaacacagctaaaacaatcctgggaaataccacacacacgagagaagtaatagt
ggctgatgctgctcatatgaacaggactttcctaactgtgtgtcaatgctcagcccattc
actgccttgaagcttgtgagtgacttaccatacagtaggccattgctatttctatttatg
gctgcttggtggcaagtaccttcttagttttctacatcatattctcaatagaaagcctag
tacacattctccagggctactccgagtatgcataccagaatataaaggttaggacacatt
cattttgagtgtgtgcatttgtacctctttcttctttcctgctgaggcttaactgccttt
ttctattaaatgtgccttaggaatttttatgggtggaagtagaagtttttattttgtttg
ttctcaagtataaccacatgggtgcatatgtatgtctatatctattcatatgaatttaat
agaagctgtgaggccattctctgcaaaactggaaagattgttctttgaaaggcagctgtt
gtctagtaaatgaccttgttagcccagagcccaaagcgtgactaggaaatctggggtgat
tagaaggcagttcctctaaggtcagttttcaagttgtgctgtctgccgtccccatgctgc
ttcattttacatccaagacgtatctggttcatgagcaaaagatttaggagggcagaagcc
agaaagcaagcacagcccttcgttcttctgccttagagatctgggcttatccgtgtccca
gtttatagtaggactctgttcctgttcagagtgttttgacctgaaccaagtgcccacatt
tttaatcctcatACTCTGGGGTGGATCTCTGTAA
Primer
(+)atgagcctttcatggtgacttt
(+)TTACAGAGATCCACCCCAGAGT


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