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Mouse element [ mm1927 ]


Position: chr13:15,732,059-15,737,264 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGTAGCAGAAACCCAGTTCTGAatattgcctcatggaaaagagaagttgcttttaaacac
tggaaattggttatctttacctgcaagcccactggaagcaggtacacaggtatagaaaca
gacttcacattgcttacagtttgcctttggtcttcactcttatgggcagctttgccatct
agaggctcaagctagacacattctgttttgtttaataatgaagcactacaaagtaagaag
tcagtcttaaatgctcccattaatatttggttcagttgttcagttagctgttaagatttt
ctgcaagctaatggctgacttagtatgtgtgtgttacattagggatcaaacccagggccc
tgtgcatgataagcagatgtgcgatcactgagctaaaacctcatccagttttgagacaat
ctcttagggtggccttgaattaataactataccataggtctcaaagtcatgacccgtatg
ccttagactcctggtttctggtattacagttaccatacctgatcaaggctggctttttgt
ctgcttgtttgtttgttttaacctatcttcagagtactgtgaagtagctcaggactctgt
tttctttgctcagctaatttgatagtattctatccggattacaccatccttatatattaa
ggtaagaatgctaaaaattggttttaaaaaggtaagaatgctaaaaaaaaagttttccca
aggctccttgagtttatttaaaatctcatgcttcttcacggcatatgaagaacatgtgta
tgtttctttacatatgagatgtttgcctcatgctatctcttgtgtctctttttctgtttc
caggccttctgccttatctagtagcccgacgtatccagacttgcccttcattaggatctc
cccacaccgtaatcccactgcagcctcagagtcccccttcagccccccacacccctacat
caacccatatatggactacatccgctcattgcacagcagcccatccctctccatgatctc
tgctgcccgagggctgagccctacagatggtaagtctcagacacgtttgtatttcccttg
caacactgtataaagcagatccagcatatgtgaagattttcccacatgacagacaccgag
gaaagaaaatgctttaagttcaaaatttaatttcagcttatagcactgctttgtgggtgg
tggtgtccatagttttgtaagaatagcaatatagagaggaattaaatttagagagtaatc
aaattgggattcatagcaagatctgatggactcacctccctgccataaatgccctcctct
tctgcactccacacatgattaggcaagcccttcaggtattcccatgacagtatgaattcc
ctgagtgccttgcccattttctaatgaatgctcttatgttctgtatatcagaaagacaca
tttttacagatatgtctctgagaacagagcttgacacaccactgtgtatggggatcctga
taaaactgatagttcttggggcagaccagtgtggagtgggggacctgagtctttaatctg
atagaagcttccaggtgatgttaaggctgttggcctatggtgggccgtgatataagtagc
aagagcttaggggaggaaaaggacccattcttaagtgtaccttcagcctctgagcatgcc
aagtaaaactagaacattgagaactaagaacaagctagactttattcctgtaattcctga
tgctcattttagacttcaaatgcaggcttcatttggagccggctattcataacatcctat
cagcctattccttaaggcttgttgaaatattgaatgtgtcttctaggtatatataaatgt
ttgcctacaaaggctcaacttttcattaagatacaaaactaaacaagctttagtaattgc
tggtgggggctgtgtttgcatgctttattatagaatataagtcactgctggtgttacata
gtaaagagatactgtgaagttcatttcactaaactctctgctacaacttccatacctcta
attctaacattggaactataatctgagactgtacacagtgtcagctgtatgaagtttctg
aggactcgttcattctcatgtatgtccaggaatatccggcttctacaaataattactccc
ttatgtatttcctttttaaaaattccgtatagcgaatattttcgtaatgtagccaagaga
tacattttttctcatttgagcaatattgacattttaaaaacctacaaaaagtaaaaacat
gattaaacttttctgcttggaatttgattttgtgataaaggatgttatgtagtaaataga
accaaacataaggaaaatggataaggagataagaaataggctcaaggtgcaattggagtt
gctgtacctgacttgcagaaatttgactggctgaggacttggtagttgtagttactgaat
ggaaatcatgcctgttgtctgcatttaattatcgtgaattaaatatccattggttgattg
gtggttctgccttccctttcctgcctcatgagactctaattaataagagtctaagttact
tttccactgctatgaggaggtaccatgagcaaggtaactaatagaagaatttatttgggc
ttacagttacatagggatagactgactatcctgacaggaggcaggcagacatagcaatgg
tacagtcactgagaacttcccacgaccagaagtaggagggagggagagagagaattagca
atggtgtgagcttttgaaatttcaactcttatctgcaatgaaacatttcctccaataagg
ccacacttcctagtcctccccaaacagttccactaactggggagagaatagtcaagctta
ttcacttctggagtccattctaactcaaagcatcatactacccagtcagatcatttcagt
aatataattaatataatataattcctcttgtagtctaatactttaaagatactcatttgt
gctatgtatcatgcataaaaagtattccatgtggacaccaattgaaaccatctgttgcta
ggactttttgctgtagctagtaaagtgtctctgctcaaatgctgtccctaagcactttat
gaatgtgacttgacttctggctcctagctgcttcatgaaactttctgaatccagatttct
gaaaatctagaggcctccctcagaagtgctgcttttgcacgtaaattggcaggtggaaac
taattattatcccactcatgtgagaatgactcttgccaggaaattgttccagagtgatag
gtacattttctttttgattttgtagtggtgggagaaaagggaaaaggagagcttgtaaat
tctggaacatgaaattgcggcttatcatgcagttgtgtgtcagtagtgggtgctgctctt
ttcctctttcctgtaaactctgacttcttctgttagtgagtgttaactcagacactcctg
tcaggagcctggggaagtattttaagtatgtctggaaagatatctcagttgtctgcattg
tctactattttaaaaagtatgaacatacagtaattatctttaggaaactatttcctttgc
aggcgagggagtcaatcatgaccgtgtacatacagcttaatttggtaccaacactgggac
aaagttatgtatattggactccccataaattacactgtctagttaacatctttgctttct
tagtatatacatgtctcctctgtgatcccaaaatgacaaaattacctgaattacatgtct
cttacaatgtgtcccatcttaagagatacatgactatataaaaattcgaattcatgataa
tttaacaaaaaccaaaacttttataatgtattttactatttttattcctccagtttttcc
ttccagataaagacatgatgcaaatgaatgcatacgtagaacagctttattgcacaagtc
ataaaagaattgtgtttgaaggttaaatggcaagtaggcttagaatacttccaaaacagt
gtctccttgtctgtcttgcaattgtcactgtcttgtttcttcttgtagctccccatgctg
gagtcagccctgcggaatactatcaccagatggctctgctgacaggccagcgcagccctt
atgcagacatccttccctcagctgccactgctggtgcaggggccatccatatggagtacc
ttcatgccatggacagtaagtgacagggctggttgctggagagccgggagaggagcagaa
gctaagtaggaaaatggagagcaagctgcaaaggttaagctaaatttccaatctaaagta
agaaggaaccaccctgaggtgaccttagcctcctggtgaactgaaatgtgcagcgaattg
tagcttggtagcaatactagaaatgtagttggtcaacaaattattctgttctgcttcttg
taataagaaaagaaaggaacagattcctcttggattttgtgtggccgcttcatggatttt
tatcctttagatagtaggcgttaatttaattcaatttatgcactcatgttaaaatactgt
gcttcatgaagaccctttgcaggtgctaagaacacagaaggttcataatagttatactta
gtggggggaaatccagagacatctccagattttagttctgggcagtgaaggaaagaagat
catgtaatttgcatgccacttggggcatggaggtgtctagtggtattaggattcctttgg
gtagcagtgggcctatgatactgctttttttttttttccttcttgctccagcccaaagaa
ttatttgtttattatatgtaaatttgctgtgtctgtcttcagacacaccagatgagagtg
tcagatttccttatggatggttgtgagccaccatgtgggtgctgggatttgaactcagga
agagcagtcagtgctcttaacccctgagccacctctccaggcgataatatggctttttag
agcatttcaaagctctatctctgaaaggacctgttcagcaaatatcctttggcatgacct
tgaggagtgatgctaaagtccagctattatatcaagtggtcaacatatgtttttggtttt
tgtttttgtttgtttgattgtttgtttgcttcttagcagtggtctttgacccttgtccag
ctaggctttgtttggagtcattctTGTCCGAGAAGTGCTTCTGTTA
Primer
(+)tgtagcagaaacccagttctga
(+)TAACAGAAGCACTTCTCGGACA


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