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Mouse element [ mm1926 ]


Position: chr13:15,727,734-15,733,049 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGCATGGTTTATGTCTGGTTTTaggccagtttgaaatatcattgtttttctgcatatgtg
ttgcttgttctttctaatatcagcaattgcgaacacacagttccagaatatggaggcaga
gaaggactagtaaccgtcacttccagccttacgtggatctactgagagtggatctactga
gagtggatctactgagagtggatctactgagagtgtaaaccaacagagacaagccttttt
tctttccttcttattgctacttcaattgaatactttttaaaacaagtttaacaaatattt
accaagtcaagttcatgaaatacatccatttatatgtgttttgtggctgcctctatattt
ccttatacacaattcatccctcctgtggtcactattttgattagtccctttaaacagcaa
tgtctgctaagtctaaagagtttaaccctctttcacagatgtgtgttcctttacgaatgt
aatgatggacgaatgaactagctaccaaggctttggaaacagcactgttaggcgaaggca
gaagtgaccttactgaaagactgattcatatacagttagctggctgtttgagccattttc
atgcaagtttctgcttttgtcaacactatggaagtgtcatctaatctagcttactagggt
gtcttagtcagtgttcagttactgtaaagagacaccatgaccacagcaacctctaaaagg
cagcatttaattgaagctggcttatagtttcagaggtttagtccattaccatggcaagaa
gcatagtgatagagaggcagacatgttgctagagatatacctgagacttctctatctgga
tccacagtcagcaggaagagatacttgggcaggcttgggcccttaaaacctcaaagccta
cctccaatgacacacttcctccaactaggccacatctcccagcccttcccagttactgct
gttccttgatgaccaagcatttaaatatatgagcctatgggggtgggcgtcatatatcct
tattcaaactatcatgggttctgatgcagaagctcagctttaacagagtacacagggtga
tggagcagtatggaaagtggacttgcagccactgctgtacttggaagctagcttgtcatt
tggacattattggatcgagaaaaggttttgttggccagtttcaaaatttcttgacattgg
gtttgcatgtgtgccttctaatgctcacagcagcaggaagggaactgctggtgtcacgat
gcacctacctcatggatcaggagactgatgtatgagtaggagtgagttgtaacccacatc
caggtcctttcttcaaaggccctgcatttcattagtgagctcataatcttagccacccta
tgtggttctctgacttgactttaaaggagctctaaaaaaaaatccaagtagattgttcag
agaagagtacaaaacagactcatattccagttgatactgtgaagactataactagatact
tacagcagctgtaattataatcgccaaagtttgcagttaccaagatacgttcagtagtgg
tatggattcgtaaactgtggctcatcttattaatggggtattacatgatgctgaaaagaa
atgagtttttaaagacaagcaggactttgccatttccaagaagacagatgggatgtaaaa
ttgtactcaagattcagaaaggcaaacattatatatttttctatcatatgtaatctagat
ttttttaaactatgaaaatgcaactatttgcgatggtgtacctgaggaggaaggataaaa
gaggatgatggcaaatgggtattaccaaagttcatttacttacatgtgtaaaaacgtcac
aatgaaatccattactgcagtgaacatacactgtagggaaggaggaaggttttcatcaat
gagcagacatttaaggaaacaactaagcgaagggctgtgcccttagagaatattgaaaat
ggcaagagtctgcctatgtgcggttcagcaatatcagaaatctatactgcagcttaattt
tgaaagctagtctcccttcccctctccctctccaacccagaggtcagcctgactctgctt
caggaatgctttaattaaataattaaaggtgtgcatcactatacctgtcaaaacaaaggc
tccaggcatttcaagatttgaaattatatagcatttcatatttgtcaatcctgatgtatg
ggcctgtttatgtaatatgatatgattttacatgtgcaaatgcatagattcccgtgtgta
ttttgagtgagcctttgtatggcacaatcatgggacttctgttcaccaccgcccctcatt
cccacagacagcaaagcacaaagagggtacagaggtgcccaggttacacagctgccagct
actgagctgccggcctcagactgtcccttactgactgtctggtgcctgtctccaggattc
ctggtgagccatcactgtgtcaccattgtgaaacactttcttgcagaagtgggtggcttg
catttaccagatggcctgtttcccgagggcagttaatgagcagggtgcctgttgtgcaca
cctctctgaagcttctcccagtcaccttgtttgtaaacactgatcccctatctctgagtg
catctgtctgaaaggttaaagtgtagcagctttagctctaagtcttgcattactctcctt
tctgctgatacttctcactcttctgtatatagccctgagtctagcactctcctcaggaat
ggagtggtgagatctagaatccttctgagaggcgtccctagttgttctctgggtcttcct
gaggtgaaagctcggaaggaagctctagaccacctgtcacatcctcaaggtgcagggaag
agaccaaccttggagatcccacctccttgccttactctgggattagtggccaccccagcc
atttctccatggtccccacatatttatgaatgtaggtttgtcttcatgggcatgattctt
ataggtggaatttgggctgatgaggacagaatataagaaccagaataagttttcatcttt
ctcaaaattacaaacagagcaacctgctaagaagggtgaaattctccactagtgtgtagt
tcatatcgtttagcagtgtgtagtctgctgggaccaccatggtgtatcccagaggtgtct
tgtcaaggactcagtgaagtgattactgtgtgtgtgcgcgcttgtatctcagcataaggt
ttatgttttatagattactttttaatcaaactggtagaaggattgaccattctgtcgggt
agaaatgaatgtgagcttgccctgtactctgtaagtgacctaacatgtctgaatggagtt
tgatttaacaagccatagaagggtacttggagggtagggggtggttttccagagacatga
agtgaactcctgtggtacagcttctgccagtttctgtttactttgttagatggaataaag
gccttttaacttttcaaaatgacacatagtgtgcatagcatccagtaactgtccatgtgt
tacattcaagtattatataagtgcattgctgcacttttctagatgctaagaactgtgcga
tagacacttcttactatttgtgtataaatttaggaaactgaaattttagtgtatttctcc
agaaggaactccaagtatcaaaattacatgagaaaatcctcacacagccagcaccttgtt
tcggaacactgggtctttgcttcatatgccctgcccagtctacttgctggagccatttcc
attatgatcctactctgacaggatgacagagccaggggcccagtggcagtgtctttgctt
ccctgggaagagggaaatggtgtttttcactctttggtttccctcctaaccatgtgctct
cagtggctctgcctctctcagtctgttctccacatgcctgctcactatcacaggcagtga
gtacagagtttaacctgtcatagccagttccctgtatcatttcctggaggcatctattag
ggaaggagcgcactggtgcaaggctttgcagatctgtgttctagacatgactgtccctgg
gttgccaatggttggctgaatgtgtggtgaggttgaagttttagacatgtctctctgaga
tcagatacatcagagagctctgtaggtttgcacttcaggaaagcaagcctcttccattat
cacatcactaccggggcctgggtttgatgaaaccctgattctttaccagatgactaagcc
caggttttctcagttgttggcttcttactaaacataattaataaggatccatgggaaaaa
tgagttgtagcagaaacccagttctgaatattgcctcatggaaaagagaagttgctttta
aacactggaaattggttatctttacctgcaagcccactggaagcaggtacacaggtatag
aaacagacttcacattgcttacagtttgcctttggtcttcactcttatgggcagctttgc
catctagaggctcaagctagacacattctgttttgtttaataatgaagcactacaaagta
agaagtcagtcttaaatgctcccattaatatttggttcagttgttcagttagctgttaag
attttctgcaagctaatggctgacttagtatgtgtgtgttacattagggatcaaacccag
ggccctgtgcatgataagcagatgtgcgatcactgagctaaaacctcatccagttttgag
acaatctcttagggtggccttgaattaataactataccataggtctcaaagtcatgaccc
gtatgccttagactcctggtttctggtattacagttaccatacctgatcaaggctggctt
tttgtctgcttgtttgtttgttttaacctatcttcagagtactgtgaagtagctcaggac
tctgttttctttgctcagctaatttgatagtattctatccggattacaccatccttatat
attaaggtaagaatgctaaaaattggttttaaaaaggtaagaatgctaaaaaaaaagttt
tcccaaggctccttgagtttatttaaaatctcatgcttcttcacggcatatgaagaacat
gtgtatgtttctttacatatgagatgtttgcctcatgctatctcttgtgtctctttttct
gtttccaggccttctgccttatctagtagcccgacgtatccagacttgcccttcattagg
atctccccacaccgtaatcccactgcagcctcagagtcccccttcagccccccacacccc
tacatcaacccataTATGGACTACATCCGCTCATTG
Primer
(+)GGCATGGTTTATGTCTGGTTTT
(+)caatgagcggatgtagtccata


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