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Mouse element [ mm1925 ]


Position: chr13:15,723,285-15,728,287 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTCTGAGTGACTGGCTTCCTCTgttgcctgactcctgctctatagttctgctctggcatc
tgtacctttctttgggacatccggtggcagctgatattctaaacaccttgtagtataaca
gaagtcacatgagcacaggaccagcactaacaactggagaccaatggtgtgacttggcaa
cctaaaccccacctgtgaagtactgtctactgagctggctggggtctttttgaaacagta
tccttccgttgttccaagctgagtctacttcttctaatgaccatatgttcatccctgttt
caagccactcagtctactgtgccacgacgccttattgcaggactaatgatctactctatg
ccccgtgcttcatgacacaggggccaggtgactgtgctgctcactcagcaggggtccttt
ccagatgagacccacagctgttttgtgaatgaaagcacagcatatccaccccttgctgaa
ttttccttttcctctactctttatgatatcacatctatggctactatacagatgtcttta
gtctgccagtcatgagctttgtctcctagagttcgctgggtggaggtcctttctctgtgt
cccctctaagctggctctagactttctctcctgctatagaagttctgttttttattcctc
ttaagcataaacattcatgtgccatctgacttctttcaccattattgtctacattttttt
tttttttttggagaatctggaagactatacttaggggttgttaactgtcttcctctctta
ttttgcccatttgagtactattttcaatgtggatttggaaattcatcaaattccagaaaa
taggttctgtagaatgagtgggtaagtttttaggaaaattacttaaacttcttgcttatt
tgaaaagaaaaacaattctaggactggagtgatgattcagtggctaagaacactggctga
tcttttagagaactctagttcaattccaaacatacacctgtcactccacccccaggaaat
ctgatactgggcactgaatgcaataggcacaggcttggtgcacagacatccatgttgaca
aaatacctatacacataaaatagaataaaataataaaatattttcttaaaatgccttcct
ttaaaaatgaaaaggaagctattggattaaaatgagaagataactgactacttgaagaaa
tgaacattcagttttactaagctcggatccatgtgctaagaggtaccatgtgggtgctcc
tagaggatgtctagggtgtccagtagctgggcttactggcttcagaagagctgatatccc
gtgaggccaagaagaaaactatcataagcagactgtggcagtgaggagactgcctttccc
caggtaacccctcagtagtaatagcagcagcaggcatgaggttgtggggaccaatattta
caaagtgcttaccattcgacaggtaccagggtaattgctttctgttttcactagctatct
ctacatatgtgccttctgtttctgagattcaaagatattaagtagatatattcttatgta
accagaaaatatgtcttaagtaacatcaaagtatatccttaaaattgttgtttgtaatct
cttactatgcatgccacagtctcttggtttcaggcttccattggggttcttggaaagaaa
tgtctttatttatataaaaggcataatgtattaaaatatctttggagttttttcttttgc
ttgtttgttatgttttgaggcagggtctcgatacatagccctggctgtcctggaacttac
cacttttaatatgttttagtgtctttttttgttgttgctgcgatgataaatcctgaaaca
gttgttttgactcacagttcaagagtactcatgggcaggtactcaattaagcacttggct
atttagcatctgggggtagggagtatccttatattttcttctttctttattattttttgt
gtgcacctttggaggtgagagaacaaatgatatcattcaaagtagatgggtcttccctcc
tgagtcagtacaattaagacagttccttacaggtttgctcctaggtgattttatatcctt
gtctgtctagttgacaacactaaccatcaagttactgctagttacacagtactttcttaa
gagaaaaaaagaaaagatgtctttttattgcacattgcagaatggaatgtttgtaaaggt
attacatttatttgtttgacagctagactttctaaagttataattttgaatataatatgc
atccatgttaaaatcaaaactctttgtttagatgccattttgtcatgcaagtgaggtctt
ttggctcacccactagcttctcccctttcctacccttgtttctaaagtgttagagggcag
gcaagacagctaaggcagtaaaggtgcatgccaccaagccagatagcctcagttcagctc
cagtccttggaacctgtgtgttgggaggagagaacccactcctctaagttgtcctctgac
ctccaagtgtcatgatgcatgtttgcatggacatatgtgtgctcacacaaaatgattaaa
atacataattaaacatgaaattaaatctagtgtcagattcatgtagctatttttcttctt
ttgtaaaatttattaaatgggtaagaagaaccatgaaaacaccatttcacaaataggaga
ccattatttcccaaagacttacctgaatgagtagtgtgttcattaaaagcctttaaaaac
aaaaccaaacactgtacattgtaatcaattagacagaattttatttaatttttcatcctt
gggagtttaatctcttaatagaaataattgtagtaacattttatcaaatttatcttagtt
ttcatctctgggcagaataaaatccgttttagctgcaaccagtcctactggttctagaat
gtggtacataggtggaaggaaatgtatccatgaatgtgatgtttcttttcttctccattg
acaagaaacttctgatttgctttagcaaaagctttctttgctcccaaaactcatatgcac
agtctgtcttctgttgtctacttggcacttacaccactgacttaacaagtctaattttgt
ccaataatagcaaatgttatattatttgtactacttttaaggtcaccaaaatttttataa
attttaaaaagtattatatatatgtagtttgttctaaatttaattgatagcaactactat
gagaaacttcagtgtgtgtagcactaagaaaacagtgtaccttctgaagaagtgatatga
acagtattgcagaagagtgcacacagtgtatgcatacagctcagtgaacggtagtgagtc
tccataaataaaggcatctgccagttgagcaagactagaaatagaacattgtagcacacc
tgttgcctatgctataccatgaaccaaggatgagtattctgatatcctcatgtttataac
attgggtttaagtgttactaaactttgtataagttactatactacctacagtaatctttt
agctggatattctgtccagtatccctcattgtagttcattcattttcataactttgctat
tgtatgaattatttttgttcactatcctatcattgggtagctgtttctaattttatagag
ggtaaagaatgcttctgtgatcttctagtccagatgtcacatgtgcattcaataatggat
gtcactggatggtaaaatatgaatctattcaaatagcccaatccatagctgtgctttcac
aaggagggtccagcctgcacttatggtggctcagcagtctcattgctacacatctttgcc
ttaaccattgcttattgtttttatcatgggtggcatgagtaattgcaaccccataaaatg
gatgaacctatgatacccattttggttagagaagtatatctaattctaactaagaagtcc
agtcattcttgcaatgagtttttgttggttttgttccttaatggtagcatatcatagcac
actattaaaatgctataataatcgtctattctattttttttttgtaatctagtttcttga
ccttataaaattagtcttaaattatagtcacaaacaaaaacaattttatattgtttgatt
gcctttggggagatcattaaaacagtctttcgttgtctaaggctgtgcttgctgcacatt
tctcagattcccgtgggcatcgagaaacaaagcagcatcgactctttatacctcaacaga
caactgtaaaatcttcagaggaggcttccctacatgggtactaattggggatgctgggga
cctgaattcacccaagatgcagagaaacagcccatcctttcatgccagcgggagctccgt
ccgcatttactacagttttattgataggaccattgccatattactggaattctgtgctac
agcatacgtggcatggtttatgtctggttttaggccagtttgaaatatcattgtttttct
gcatatgtgttgcttgttctttctaatatcagcaattgcgaacacacagttccagaatat
ggaggcagagaaggactagtaaccgtcacttccagccttacgtggatctactgagagtgg
atctactgagagtggatctactgagagtggatctactgagagtgtaaaccaacagagaca
agccttttttctttccttcttattgctacttcaattgaatactttttaaaacaagtttaa
caaatatttaccaagtcaagttcatgaaatacatccatttatatgtgttttgtggctgcc
tctatatttccttatacacaattcatccctcctgtggtcactattttgattagtcccttt
aaacagcaatgtctgctaagtctaaagagtttaaccctctttcacagatgtgtgttcctt
tacgaatgtaatgatggacgaatgaactagctaccaaggctttggaaacagcactgttag
gCGAAGGCAGAAGTGACCTTACT
Primer
(+)gtctgagtgactggcttcctct
(+)AGTAAGGTCACTTCTGCCTTCG


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