Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1922 ]


Position: chr13:15,705,489-15,710,589 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCATCTCTTTGGTCTCAGCTCTtgaaattcctaaaagagatttcatactgtaaagttgcc
ttcagttgaaatgccatctcaaagtgttcgctttatataaggtgtactttctttcctttt
cagaccctcctcatcttttccctgccttccatcctcctgtaccaattgatgccagacatc
atgagggccgttaccattatgatccatctcctattcctccattacatgtgtaagtattaa
aatgttacccattaatgaaatggacctaagctctggcttttaggcttcaggactctttgt
taatgcatgtcttctgggctttggaggtgtgataacagtgtaagatttactcttaagata
cagcaaagctctatctgctcctggagtcactgaatcagaccctgtgctttctgaggatgc
ctgtcatatggtttagctggccactggtttctcagtattttgctgatgagagagagagac
aaacagttgtgagttataaacttaaaattaaagcattaaagttaaattttaattgaagct
taccacgtacaatatgtgcttggttgtgattttggtttgaagttctacatgctaaaattt
ttgttacatgaaaagttctgaccaaggattacactggatcgaaatgaaatgtttatggaa
gattttcagaattcccatggtccatataccaacagtcacttgattgatgggaatgtcacc
caaataagatggcaaatgtgattgaacacatggtttcacataagataaaagaaaaggatt
ggtgataaaatgtatttagtataaaaggaaaaagaaagcctcattgaaataaatattatc
tcagtttgttttgaagggaaagaaaaagaatcattgatttatacactaacagaatattct
tctgctgtaaacttgagaaaactgtcatgtaagaattggatgcactccctggaagggact
gttccctgctaatggcctcggtacacatgtagtcatatgtaataatcaccttccttttga
gaaggggaagttagaaaaacgcgaataatactttgaagaataatgctggttatatagatg
ctagattgcatctctctgactattagttacagatgtgtaattacatggtatgccgaagaa
aaatgaagttgttttaaaacaagtcctcctctgtgaacagaattaattgatattaacagg
cctaactgtatgcccaagtacacatataatattttaccaaccggtctttagatccatctc
ccattactgaattgtaatttcagttcagatttgcctggaggtgagtaatgaatctgcatt
gagaacttctgtaggcattggaggagaagtgggtatttacagagggagaagtcagagtgt
tgtgacttattcctcctgtgacttctactagagcacaagcaagtatttacaggattctga
agcctgataaaactgcactcacctaacaccaaagaccaaaggaagttctactacacagag
ggaagtgcgttcctaagtgagtttgcaagatgacctgtgactcacctggtcttatagagc
ctttatggcctggataggaccacagagatcttggtgttctgtcctgtatctagatcacac
aagacctcagagacaaagatagctaattcctcccagtctttctgagaaagtaattttaac
cagatgttctatggaatcggaaagtttttcactttttcaaaaagcatgttctagagaatt
ttcttaaactgagctcaaataatatgctgaactctttcctctgggcttcttatagttcat
cttttaagtaaattcaaataggaagttaccaatgaaaaactgcacctcttggtcctctgg
cagagttataggaccgtcaaagtctcccgcaatcctgttttgtgtcctaggctgttaggt
tcatagcaaaagcagtgtcacagatgagctaagccacgtgtggagcagcagagtcggccg
tgggttttggcttcagctgtgacattgagctggggttctaagcttcacagcacttcctgc
cttttcagtcaagttttaagatatttaagcagtgattgactaaattgttcttgtgcagcc
tacatgtgtaattatcaaagagttatgatgtaaggcaggttgacaattcaagtttcaaga
gaataagtccttgaaggctctgagagaatgttgtgtctgtgggtgtgaaacacggcaccg
aatgtctgcagtttcctgggactgttcacatcataaccgagtagattcctgggtggctct
gactgagattatgacattggctctaggaagttagagcagtcacatctccatgcctttgta
gcattgtgctttcttcgcattgttttcttctcgcttggtaatttcttaggagctttattt
ggggaaagtgctcagcatatgagcagatagacatgtagatgctgctcagtggatagctag
gctggtccagcctttgaagtattgcctgagttatcaggatgccttaggcttgccacacac
ttgtactgtaggccctggcaaatgccccctgatgtgggccctgcacttcactaaaatgaa
gctatttgctttaggaagagctcaataaaataacctcatgtatttactatactgtattta
tttgggtctctaaataaatgcttacagttagtgtataatggcaccaaatttcttctagtc
ttgctccatgatgacgcagctgtctgtaccccttctgtcaggcgtggacacacctgtgat
tgttaaagctgagagtattgatagtaaatgtggcccctttacccaaacctccccagtatt
aactgtaaaatataaaagtatcctatccagactttgaattccaagatgtttgctgtataa
ttgcctcctagaaaatgaaatcaagtgagcttactaagcttttagagtgaatattttaat
tacaggaagataaaacttggcgatattctcattattttgtaaacacaattgttcttctgg
tgccaactttagaaactaaattataagtctctgaaaaacaagggcctgtgttgatggaaa
tgctgacagaccagtgttcagaaggatagcaggcactgcggtaattatgctatcatattc
catcattagagattctattgaaaaggtttataaattgctcctctttttagataaaccacc
ctatattaaggcatcaatgatacggtgcagaattaaattaaaatctcataaaatgaaata
tgttctgtattagctgtttgacacttaatttgcctctgaatgagtagaggaaatcacaaa
ttaacctgcttttgtttttccaaccgtggcttattaggtgttagaacaactgcaattata
gcccaataataacccaggagccttataaatatgtacggaaatatgtaagcctgtgtttaa
aaactaggtttgttacatgaaatgcctttagttacactccttgcttgcacactgttgtcc
acagtttatggttgagcaaagcagctcgaggatagacatttaaatgaactaaaatacagt
actagaaataatcctaggatttattgaaatttcttttagcccaaaatcatgaaattaatt
ttaaaaggtcataagtgggtcatgccataggtgccatgtctctaggttgtcacatcaaac
tgctctctgaaatggacaatgactgcatcatgtttatgtcattcaaatagtttcttgaac
attgaatatgagaattctttcctcatcttatgagttgttcagaatgcatgtgtccaactg
atacctggaatgtctctttctcaggttgtaataatccccaattctatgtaaagttaaaca
cagtgttttagaaaaatcaccaaagtccacttagcatattgctgagcccatctggtgcct
ctgtgatatccctgagcccggacacacactgcagaagagaacgggaaacgtgtccagtcc
tctctttgttccctggcttgagctgtttacaccagggctctataaccctgtggtcacact
gttctatgctgtgggccttgataaagccctctagactacatgttactactgggttttaaa
acttctttaaaaatggagacagttgttcagttatatcttactatactcagattttcaagt
gattttttttttttacagccacaaagaatgtgctactgcattttgagtttgtgaacattt
tgagtttgtgtgtacatttgagtgtgtgcattttgagtgtttgtgagttttgagtgtgtg
tatgttttaagtgctggaagttacttgatcatgtttcatttcaaaagtaggcatgatgta
tttttagaaactcaaattataaagacttttgaattctagtatgatttcattcacattctt
gtggggtttccagggtgtgttgatatctattctgtatgtaaaaactctttgagccaagtt
tttctcattcatgaaccagtatgaattagattttggactttcctgtagctttctactgag
gtctacaaattcattttccaaagctgagtccttagttactaatccattgcaataattcag
gccccagtgatctgatcttcttgctgtgaaactgagagcagtgttggcattgtgcagtgg
atgcgaatggtacgtcactaagctgcatctttagacagtatgcagaacctgctctgcatc
ccctccactttactaatgccttttagaaaaactgctttatctttacggtccagtgagaag
tgagcactctcctagttctttcccttgagtcaaggtggcttacagggaagctgcccgatt
cagtgcagtggctatcaggaaggggatctagccttcacaaaaactagcctgcctccagct
gctcagagaggagtgagggtacgagccttaccatcagctttgagccagattacactggga
caaggaagttttgcccttgtgattacatagccttttaggcttgagagcagaaggtgagca
gaaagtgtgggaaatgcttgcattcactacttcccagagagagacagagtgtgaggaaag
gtgctactccattatggtaaatatctagggaaagcaacaGTAGGTAAATGATCAGGGCTG
C
Primer
(+)ccatctctttggtctcagctct
(+)GCAGCCCTGATCATTTACCTAC


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.