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Mouse element [ mm1921 ]


Position: chr13:15,697,760-15,702,348 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TAATTCTCCACCCCTAGCTTTGgaaactaatttagttctttctgcatgctaagcatgttc
tctacactgagttatatagttgccaaccagtatattcaagatgttggtagtattccattg
ccttccacaatgcatggctctccggctaataaacattattctctttgtgaggtctatggg
ggccagtgtcaacagttagagccttgtgcaagccctttccaggaaagcatggctgattgc
tcctcaggactcctgcttcagatgtgatggagagggaagctgaggacttaggactgtgcc
tgcacttctttctgctgacaggcttttctcggctgtactctggaagtcggtggaagcact
gtcttgtttgcttcacaggactttgtgggacttaggatagatcagaacagatcctagaat
ttcctttcatcttcattctaagaaatacagacagatcagacgtggggaccataaaatgct
taggaaatgcagctttcaaagtggctacagagatccttgtttgggtatgaaaactactga
aagttgtttgaagtcttttctgattggttctttcagacagaatgcagctcctagacctaa
cctttgctgatctttagtgtcctaactaaggcaagttctgaatacattaactccaaggcc
tctgcttgtggaactaaggttgctggatgattataaacatatcccagcctcttttataaa
tcattagcactaaggatccaagtacatggttttgcagctatgggtttggcttttgaattg
tgctattaaaaagtactgctcttttataaaagtactttttgtcactaggaactaacttat
cttttagcttttaagtttatatattggcgatgaacttttcaacaaatatgtcaacagcat
atttcagagtaatagattgttatgcttttatgtgattttcttgggtgaatttgaagatta
gatacagttgccgtgtgtgtaccttctcatacttcttctctttgctgcctctctctagtt
acttctttttcccttgtcttggcatggaagactgcaaaccagaagtatgccagattatac
ctgttttggggagcatagcctagacacattccagagacctgggtggcctgtatggaggta
gggtttattttttgcctttgggcatccaacacatgggatctagagatgagaagcctacaa
atctgctgacaagacaaggtagaagtttccagaaatgaacagaagcaaccatctcttcac
tcccaagacatagccaagcagctatgatgatccttttgtcaaatcacatggagagagtca
tttatcacttccacgtggaaacctgaaattatgtctgttaaagggcatagcatgttcccc
ctttctaagtaggactgaagcatccacactttggtcttccttcttcttgaacttcatgtg
atatataagttgtatcatgggcattttgaccttttgggctaatatccacttatcagtgag
tacataccatgtatattctcactcagaataatattttctagttcatccatttgcctgcaa
atttcatgaagtcgttgtttttaatagttgagtagtactccattgtgtaaatgtaccata
ttttctttttccattcctctgctgagggacatctgtgttgtttccagcttcttgctatta
taaataagggtactataaacatagtggggcataaaatgtcctttttatgtttgagccacc
agaaattcccagatgccagggacgcaagaagttacaaggacccatcggggttgacattag
ccaaaatacccaacaaaggggtcatagaacctgtagagacgatatccagcagataggcat
ggccccggttaagggatgggggtacccacccatctccagaactttaacctagaatgattc
ctgtctaaagaaaatgcagggggacaaaatggggcagagcctgaaggaaaggccatccag
agttagctccaccttggcatccatccaatctgcagacaccaaaccctgacacttttgttc
atgccaagaagcacttgctgacaggagcctggtatagctctcccgtaagaggctttgcca
cagcctggtcaaaacagatgtggatgcttgcagccacccatcagactgagcccagggacc
ccaaagggagagttagagaaggactgaaggagctgaaggggattgcaaccccataggaag
aacaacaatatcaactaaggaccctccagagctcctagggactaagccaccaaccgaaga
gtacacatggaggacccatggctccagctctatatttagcagagaattatcttacctggc
atttaaaataggaagggtaggcccttggtcctatggaggttcaatgtcccagcatagggg
aatgctgaggcgatgaggggtgagtgtgtaggtgggtgggggaacaccctcatagaggca
tggggaaggggtatgggatgggggttttgtagaaggaaaactgggaagggggacaacatt
tgaaaggtaaataaaataactaaaaaaaggcataacatgatttgagtgcctcaaaggggt
gaattatagtatggcaagagtgctgtggtggtagcagtgagatctaaagtatcagttaaa
ttaacttcatattgtctacatatttgcacagaagtagtgaaggcttcacatttgagtagg
ttggaaatattcttggatgttcataaacccactcagaacttatggtatttgccagaagta
aagttactgagttttagaaagaggaggtgttgcatttaattttggttttgctggtcaacc
ttcagtatgaatatatacatattttgcttcttctgtaatttcaagttaaaacattaaatg
attactacagctggtagatttcaggttgattccgtcctttgtgtttaccttaaaaagtct
ctccttcctgtaaatttactaacactagaagtatcctgagtgctgtagccacactctaac
gatattcctaaccaatgtggtttgatgtttaggctggcctacctgaggttgtgtcactca
agtgtgtgtgtgtatcaatgcaagctttctgtactgtgtacagttttggaaaagtacttt
gtgatctaacaacagatatgtaaaacattttctgtaaattggggttttgtgttccctgtg
ttgtgtctcaaaggttgtccctttgttgtgtgaatgtgaccatacataatgggtagacaa
gtaagcaagacagtatttcagtaaaactttaattacagaagctgtgtggtatgatagttc
cagatcctttcagtaccatgtcctatccaactcgagtctgccaggctatgaactgacaaa
caggttctttgagtacatctgcctcatttctacagcatgcagagccaccatttcttaaca
ctttcatgacatggtgtcatttgatcataaatattgctgttatatcacaccacatcttct
gggtggaggggatcggtccttttacatcacctgtgtcatcgtaaaaggatgatacatatt
tgtaaccattaagaggtttcaaactcttgacagcatacattttagaagaacaagatcttg
gtgctcatggtgtactacagggatactgaacaggcaggaccattctgtccatgtacagta
ggaatcctagattcacctatgcagaccaaggagaaccaaagactgccttattgaaggctt
gtggccacatgtctgggatgtctcctgaggggccagatcagttccccactgggtaccatg
tgtcaatgggcaagagtagcaagagtctgagctagtgagtcagtggagacttttcaagtc
catgttactcatgtctccatcaagccactggaaaaggtgattattcaaaatgctccacgt
tcgagaggctattgtaaggtctagggtgcctctctctgtcatttcatcagggcagtatct
tgccactgctttggttttccttccctccttttccgctcctcccaaacttgagacctcatt
ttatataaggagaggggcttgtattgaatttggccaatggatttcagtacagaagcccat
gcatcctattcctggtctgtttactgacagtaggtgcaacattgctacctctggtcttga
aatagtctcaaggccagaccatgttggcacctaaatcagctaggaggacttgtgcacctg
gaagtttacttctgttgatttctcatctactgtctcctgggcaatcagagcactctgaca
tcatttggcgaattactccttcagggcactaactgagttgactttgatctctcctttttt
aatctacaatttttgtatgtaaatttgaaaccttaaaagacaatttcccaggatggcatc
caagagatcttatagcctgaggatactaaaactatttcctgggagaaggctgtaactgca
gatcaatctccacatgtccttggttattccctggccataggttttatgatcaacccatgc
tgttgtgaggagacctaaaactcaatgcctctcatgtctaatgaaccccctaatacttgg
catgatgACAGGCAGTGTGAAGCTGAATA
Primer
(+)taattctccacccctagctttg
(+)TATTCAGCTTCACACTGCCTGT


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