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Position: chr13:15,689,297-15,694,497 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCTTGCTGGGTTTAAGTTTCACctgctgacactcagaggcactttgacacacccttcaga
gccactttcttccctttctgtcacttcccccttcactcttggggttttgtttgttttttt
cagaggtgaatgaatcccagctaatatccatcctctctggagtttagagctcagggtgct
tggcctcactcagacctgtcactaagtcttcaaacctccactttcagcacctctgcttcc
atgtgttaggtgcagttctgctgacaaccagacctgaactaggcctaccaggacacccct
ggcctagcatctcttttgtctacacctctgctctcagtctgactcctcaaacaagagagc
atttttggtctcttgcagctctcttctcagcacaacagttccctgtaaatctgaagacac
cttcgaggaatagcatcctctccttagcaccttggtagctgttgcctacggcttctctgg
agccccagtatttctgtgtctgttattctacaccccttgtggacagatcttcctcatctg
atatcattattacactccctgacggggtatcctttccgatgattaggaggacagacttga
cttggctgtagagttcctgccctggatgggcttctcttggatgtctgcttggcatatgga
aggcagatcccttgaatttccagattccagcctgaactcactctttcctgtcccttgtcc
catggctctggctcccagtataccactggcactggcctgagccacacacagccttcgttt
cttttgccatctttattctctgtcctttttctttacccagggatgcctttccattccagt
gacctccattcccacacctccctgaattctgagcctttttctctcttgtctctgttcact
ggaacatctcgcatcaatctgtaactgtttgaaacatattaccaccaaagcagtgcttta
taaagtcacacctatctgtctcctgactgtccctccttggtggctggtacagtccgcaaa
gccttctgcagcatgccttctctttcttccaggatgctctgaaaagacaggtctccaaat
gtggttgccacagggaaggcataaggttattagggaacttagagattccctggattaacc
tggcctgctgattgagaagcactggggtggggctcatcagttctcattttaatttacatt
gctgggggtttaaccatggcttagaggttgttaggcaagcattctatcacggagttatac
cctagttcacacttggcattttagttagttgtgatatgaaagttatggaagttcttggtg
gtgggcctaagaataggctccctgactgtatcctgtggagatggatggatctcctctgtg
gtccttctcatctctgaatcagccttcctatgaggggagtgagtctctgaccctctttgt
tagctgtttctttgtaccttatttattatctttcttgtcatgcaatcacaatttgagctg
ctgtgcctcttgggactcagagtcaacatgttcttggggcatctgggaatgtgcctgtcc
ctttgagttcccaagatccaacagtttcgggaagctgggagtgctggtgagtctgttttt
ggaattatattttacttacatattttttgacaacttgagttctgaggtatttgcacccaa
gcagcctagaaaaaaaaatcctatttccagttgtttagtcagatgcagatatttgcaccc
aaccaatagacagaagcagctgacccctgttgttgaattagggaacactgaaagaagctg
aggagaagggtgatcctgtaggagaaccaacagtctcaattaatctggactcccaagatc
tctcaaacactggactaccaaacagacagcatataccagctgatatgagggccctaacac
acatactgtagaggacttccgggtatgtgttcattcagagatgatgcacctaaccctcaa
gagactggaggccccaggatatttagaggtcaggtagggtggggggtggggtggggacat
ccacgtggagacgggagtggagaggatgtgtgggatatggaatagtcagagggtggatca
ggggtggggggaataaaatatggagtgtaaaaacaaaacaaagcaaaacaaaacaagaaa
cccttaagatccaaagttggcgtacagccaaaaatgattgtttactgagtgtggtggcta
atacttattgtgaagttgacagatctagaatcatagaggagacaagcctgcaagcatgtc
tgtgagggagcttctaggtttggttaactaaagcgagaaggaattcccaccttaaatgtg
ggtggcaccagatcatgaactgggtttctgaattgaatgcagagggaaagtcaagctgag
tagaacccttcgccctctcttcttcctgactgcagatggagtacagccagctgcctcaaa
ctcctgccaccctgctttccacaacacaatgagctatggcttcaagctctaggccaaaat
agcccaacccttccttctgtaagttgcttaagttgcttcttttaggcattttacagcagc
attgagaaaataactgaagtcaccaacattatgaacatcctgtggctcttccatgaaacc
cctgtgaagcctcctgctgccccttgagtaccagactctccttgcctcccacccctgctt
ctcctgtgcgagaagcaagtcactggccctttctgtccgacctgttcctttgctctcaca
gagaaatctcctagagcttcatttctctatagcctgtttctggttcccttaacaagataa
agcagaggtgcagctagcttttggtatattttaacctcagccctgaacttatttggacca
ctttgtgttcacttctggtattggaaaggaaaaaggacattaccacttgggtcatgaaga
gtgcctttcaagttcccaggcagaagcatcctcttctaagatcccccactattgtatatt
ttttcctttatagatttattgcattagcatttaattactcttcatgacagtattaaattt
tatgagtgatttatagttttaatagagtcttgtataatttattgttcttggcatttaagg
tttacaaaattctaagagccatgggtactagaattacttatgtccagaacatcaacatgg
gtgagaccccaagtaggccagttgcactgccaccctaatcttatttgatgtcactgccca
ctactgtgatgtgtgtggcactggaagtaagtgcatttgcactctcttaaagaaatatta
cttctttccattttctcttggtgtgcataagagagactttcttttcccatcaaaggcagc
tagcctgacaaaagcccatattccctgaacctggcctttctcctttgcactaataagtgg
atggtgtcagagtgtgagatctcactgataaggataagacatcacacacaacaaccagag
tgaggaataaagacagaagtcatcttggccctgtgtgcttgccacttgtttgggttctcg
agcaccacttttgcaaaagaatgaccttgctgggttacttttgctttgtgtgtttcttta
tgtggtggtgggcaggtagtgggtagaaggcagggatagagagaccaaggcttttaagtg
gagatcggtatatgactggatggcatggaagtcccctcccaccacaatggggctccaact
ttagttcttgagtttgatggtagttattctcatctactgagctatctcactgtcctaact
tttgttcttttgcatttctctctctctctccttatgttcttttggctagtttggaactca
ctgtatataacatagtctgtggacactttgccccttcttagaaatggaaacaatcaccca
tggaaggagttacagagacaaagtttggagctgagacaaaaggatggaccatctagagac
tgccatatccagggatccatcccataattagccttcaaacgatgacaccattgcatacac
tagcaagattttgctgaaaggaccctgatatagctgtctcttgtgagactaggccagggc
ctagcaaacatataagtggatgctcacagtcagctaatggatggatcacagggctcccaa
tggaggagctagagaaagtacccaaggagctaaagagatctgcaaccctgtaggtggaac
aacattatgaactaaccagtaccccggagctcctgactctagctgtatatgtatcaaaag
atggcctagtcggccatcactggaaagagaggcccattggacatgcaaactttatatgcc
ccagtacaggggaatgccagggccaaaaaatgggaatgggtgggtagggaagtggtgggg
ggaggtatgggggacttttgggatagcattggaaacgtaattgaggaaaatacataataa
aaaaatattaaaaaaaaaaaaccatagtctggcctctaactcagagctctgcctgattca
gtttcccaggttctgggattaaagtcctcatgcttgtgttctccaaggcaacagaatgta
gctcatctgatttttaaagatgcaaacagttccctgagtcttacatcagtaggtgtgact
gggcatctcttgtttagggttcctgcatctttagtcattctccagatgcacagggatgga
agaagttgttcataagcctagggctctgtctccctctgtaaaaggcttccaggaccaggg
cagggcactgagcatcctatgggattcagtaggttttgcctgttttctagcactgcatcc
gacctcagtggtctgttggctgttctgttctaggggctctggaggggaaaatgcagactc
agccctgctcacaagcttcccggggtgtttcagtgcatcccacataggagccttcccgtc
ctgtttagatcctgtgaattcattgcagggtctgtgctcttgtctgttggaaaaaatatc
gtattattttcagggggcttttgtttcattattttaagtagggtccaacaagaggattat
gtctcacttttctgtgttcgtagttgagttatatcaacttgcagttacagaataaaggta
ggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtaca
ctcacacccacacacccacTCTTGGGCTCAGCTTTCTATTC
Primer
(+)ccttgctgggtttaagtttcac
(+)GAATAGAAAGCTGAGCCCAAGA


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