Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1918 ]


Position: chr13:15,676,239-15,681,038 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTGTTGATGCCTACATTTTGGAatagcctcatttttcagttcttcagtcttactgtctta
ctcctgctttgttgatcttcttgaaccccccaccctccccatgcaaccttaaaagtgctg
gttctttgacaaccttcctagttcttggtctggcctacagcagccctgctactccaaact
tatcagcactctgctttctttgggtcgtccgacttttagtagatgtgtctttaatgggga
gtatcagttacccactgttgaatgaacaacccagacaatgatgtttaccttgtggtgctc
tcatctggtctggtgtttgcttccaccaaccacatctggaacatgtgcatattctaacac
aacatctagataggtatgtagcaaggtctccatgttaggtctttgccaatccacatctcc
taggaacccttcccacaaagtttggtttggatgatacttggtgtttatttctgctagctc
tgtagtaataccttttcctattacaactactaccaatagtaacagtgtagtaatctaggc
ttgaaggtcatgaatagtgtttcagcatttccataattcttggtaaagttgagatataac
ccaagtgtctgactcccagagctgtgccttgctggactctgttgctaccttgcctacatt
gggtgcccactgtgctctaagtaataaaatggccttatctttaacagaacaatttatatg
tatacacaagttcctttgtgaatttgtgtgcaccatgtgtgtacaggtgcttgtggaagc
cagagagcatcagattcttgaggactagtgatttgcctgatgtagagacagagtgctgac
tgagtctgctgcatgagtgttgaacccttgagccatccccacccagctccagggacttta
cgtttcaggtgtatgcctatgaaaagaaacaaatccagctggtgtgattgctcattcatt
ccatgtcagccccatccttctctccacccttggatggacggacttactttctttcttcct
ttcttccttccttccttccttccttccttccttccttccttccttccttccttccttcct
tccttccttccttccttcttttcttttttcttttttctttctttttttttcaagacaggg
tttctctgtatagtcctggctgtcctggaactcactctagaccaggctggcctcgaactc
agaaatccgcctgtttctgcctcccaagtgctgggattaaaggcgtgcgccaccaagccc
gaccttggtcattcttatatgtagggccagtttcctttaaaataactttattttcatagt
ggtttttaaatgtgatggtcagcagcactgagcatttacaaaggaagtagcagcagcatg
aattgctatgtggcacactttccatggtcctgtgctgactctgtgatgactgggtcacgc
tggctctcttcacacctttgggcttttcttcccttgcactttgaaccttcgttaggtaat
tgtgggtttatttgatatttctttctttgtggaagggagcaatcacctttgtgctgttga
tattgcctctggagtaactagcagacagtaggaattcaatcaacatttgtagaaattcag
ataagcaaatgaataaatcctgtatgcttaggcctgtattctcatttatgtatcctgtgt
tagattttcgtgaaagtctgtggcaaagagattgtttttctagtgagtcatatggtaaaa
ctgagaagtttattcatgtagaggaattataaactgtggacacatttggaagacagatga
agacagaagctagttagtttccgtcttgagcagcaatgactatggctaccttcaggcttt
agacttattcttgctattagaataaaacaagaacttagataagatagctctgcatattcc
tcacatttcattttattagaaaagtggtacttgatttttttctcagaaaataaagtaact
cagacaggcagagctaataccctgtaaaaaaaaccgctgtacacaatatccagtgtcact
tttagggtgccctttttgtcttttccctgataagccctatggttttgatgtgtaatttat
acctgatcaggagcacctcttcatcctatttattgattcttccttattctgaaacctcgt
tttctatactattaacttctgtttcaggaaagagatttttattgatgaagaccatttcca
gaatagggatgtggctcaatgggtcagtgtttgcctagtatggctaaaactttgggttgg
atcccaaatgggatataaatcaggcctgtggcatatgtatttatctcagcactctggaga
tggaagcaagaaagtcaggagtttgaggtcatccttgagtgtgtagaaaatttgaggcca
agcctgggctatatgaaaccagggaaataggactaggtgagatggcttagccatctcgat
gccagtttgatgatctgagtttgctccctaagacgtgcatggtagaaggagagaactgac
tcctatagattgttctttgagcctcctgcagcaggtgctctccattagacccaaagcctt
ggctctttctgcctgagtgtgtgtgtatattactttttacctgtcagttcagatatccat
ctttttttactgtggatatctaagtttctaaggtttcctcttggggccattgggccatat
ccacttggatatctgcaatatatcattatcttagtacagcccatgatttttgtttgtttc
tttattgggtgtttgtgaggtcttgtttgatttttgaaacaggatttctttatgtatccc
ttgatgtcctggaactctgtagaccaggctgaccttgaattcagagagccacctgcctct
gcccctgaagtgttgggattaaaggcatatgccactattcctgactcttttgtgtgtttc
ttaaattttcgacggtgtcagtgtcacacttttaggaattccgtcttttaaaatctgggg
tttactctcagtgcaagcttcatcaggctttcagcagctccgactacacctaatgtgcac
agcttcacgcaaaggacaggaattgcggcatgggatgacgatgctagagcaaagtgcttc
tggtttccttggaattctggcaggaacagaaattctttcatttgatgcctgaggtgttgt
tcccttagtcttttagggatattttctcaggttaaaccttcatgtcactaaagagaattt
caggataagccagtatgaagcagagttgtaaagtttactgagaagtttgatgtagatttt
agtgggagattaatagaaaggcgctaggaagaataatgacacatactggagaatctgggt
gtggcttttctttgccaagcatactttatagtagctctttacactgtgttggtagctttt
ggagttgcatctttaagagtggctaaggaagctaaatgcaattatgacgtggttcctatg
cactggacaggattacagctgataaggtcacttaggctgcaggggaagctaagatgatct
taatgtaaataaaggtctagtcttgtttgtgagtttcccacaaaatatctgggaaaggag
ttaggccatatctgaaggccatacattcttataaccttatctagattcattgctatttca
attttgtttttttttcttggtagtcttgcagcagatgctgttaattgcactgtgattcat
gatttcggctgactccaaagtgaggggcctcctttctatcccgatgaccccatactattc
tttgttttttattctatctcaaaacaacctaactatgagggttaaatatcagcgtatgct
ctaggccaaatcacatgtctgtcaaaggatgggaaggacccaagtaggtacttgacagtg
ggcggtttaatctcagcaaactatgccaaagaggctggtccccctagggagtgggtgtag
ttttctggctcttatagtacttccgttcatgatttaatctgaagttgctggttattatga
catttcatcctcagttcatgaggactgaggaaggtcagtcgaccctgtctgtggaactgg
caacattccattaagcagacactctctccggctcaccacacagtcaggtctgtgggagac
ttgatgttcccattagtcatccagacgcttatatcatgtggacgtcacccctttacgtcc
tctgaccccaggaccccctgatgacctttcacttcattttcaaccctttgaggccggaaa
tgtgggaaagcagtggatgatctacagctgtaaagtgcaggaaccctgtcttgactttca
ggcttatcctgaccaaaagcgtgctatgctcctgaggaggaagagtgcaagtgtctgctg
taccccactcaagaggcctctttttttttttttttttaaataacagtaatgaaaaaatag
aaacaaaatgtacttcaggttgcaaattctgagcagcatctctgaactcacagacatgct
gtggttgcagaatggttgcaaagtgtctccagagatagcttcgtaagcttttattacacc
tccggccattgattgcatggctttatcctactctccaatgtggaagaaatactccacacc
tcccattcacaaaaaccctggatcagagccaccttccctctgccttctgctggtgccagc
tgcagctctgtctcctggcttctcactccttcacagccacggcgcacttgcacttcctag
gccgcaaccagtgagggttctcgccacactcttaacttCTTTCCTGTGCTCATGTTCAAG
Primer
(+)CTGTTGATGCCTACATTTTGGA
(+)cttgaacatgagcacaggaaag


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.