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Mouse element [ mm1914 ]


Position: chr13:15,654,444-15,659,076 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGAGTCCCTAGCTCTGTCTGAAtgccagcctccctttgccaaagagcctgccccgcagag
aagcagcaacaggccagagactcagagcttttcttctttcccttaaaacagatcaagtgt
ggttttgtatcttatttatgttcttaagtgaagttttaactacatttatttatctgtgtg
tcaagggacacactggagtcaatgctgtccttcctccatgtgttttcttgggggtgggct
ccagtctttagacttggcagtaggcatctttatccactctcccatcttactggctctact
ggttgtgttttcaaaaacgattctttaaaccttcctacaaaagggtatttctttttaaga
ctcagtactcaaggaaaccttcagtgttttgaagtattggggaagtttttatactgggaa
tgatagtgctacgaacagtggagttggtgatgtgagacagcctcatcaggacagggtgca
aggattgctggtgtttggggctcatctcgtgttgaaacatctcttaggatctccttccaa
tcttgacttagttctatagagcccaccagtccctactgcatcacctctgttcactgatat
agaaacagatagtttttctgagtttcaagagtagaaaagaaactcagaggctgtggcctc
taatccacttaatgagctgtaatgagagttcactgtacttttgcccccaagtaatattcc
agagaaggaggtctgtgtcagatgaaagagaaggcttccctctggaacagaactgaagaa
gcaactaagcttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtc
tgtaaatatgatttttaaaagaaagattccaacagagaaaaaaactaaacttttttttaa
tagtttgatactttattatatttccatttaattagagactagagagaaggctcagtggtt
aagagcactggctgttttgaggactaggagggattgccagcacccatgggtgccttacaa
acctctgtaactccagttccagggaagtcagtgcccgagtctgaactctgtgggcactgc
atgcatatggtgcacagacactcaggtagttgtacacataaaataaaacctcaaaacaat
taaattataatttatagatgaccagggctcatttcaataagctgtaagtagttatagacc
tgagatggatagctgtagtgacccatcatcctacatcctctcaccttagccctagggaga
cttgtctgtcattcctgttttgtccttttgatagacaaccacagtagcactttataatta
tttcccaacttgtcaactttgagcatttcttacatttttccactctataatatgaaagtt
cacctttaattttttttatcactatcttcctctcttttcagtactgaatttgtcaattga
caggttaaaatcatgatcacgacgtgcatgtgggtgtgtggtacatgtagtgtatgcatg
ttgcagtgtgtggggtcagaagactgtatagtggagctgatgatttccaggggttgagct
tggttgccaagcttgctgcacatgggcctccatctctcatctgccccttgtttgtacacc
taactggatcttgactgttacgtacgcagggatcatgcatgagaatgcttaccctattgt
ctctcctcagacaacacggagggaggcttgtctttcttagagcaagctttctgactacct
gtgtacactggcaggatctttttaggaatacaaggtagaatcttgcacatgctagaccgt
gagacacgtgactctggaggggcaataagaactcatccgtcctgggcatcaacttaatct
cactcttaatgcgttgtcacccatgctagaagttcaaggtggcctagctctcatggtgag
cacttttcagttacagaacctggaaagagaggtaccaaaatccatacaaaacctttgcct
cctcagaacagctctttctgtattttaaagaagaggcacgtaagtgttattcaggagaat
tccagttgctttgttgctctgctgtattttaggaggacaggtcacgtgacggatgtggac
accactggaaagtctgcccatgccagggcctcttacttggactgctgccctttttacccc
ataaagattgttctaggcaaatgcttctctgcaaacattctctatgtatggctttagcct
tgtctactttgattcttgcatcataaaaatcatcttgattttatttcattgaatgtgcta
caagtacaggcttagcttcaaattctgactctgcccccacagtggtcagggctactttat
tgaaggcctctctgagcctctgtttcttacctatacacaagcatcttacagtctttctct
atgattgttgagttgcttaaagtccttagaaggatctgtagtaaagtagtgagtgctcat
aattcttacttcttagtatcatttttaatgttactacaattctttattctagcttttttt
tttaagagggatgtgaattgtgtttgtatattctgcctctttggttaaaactgatggaaa
atacaaagcatttctcttgtgccgtgaaagtttagtcaagtaacttcaggattactgcct
tctggcccaatgaccttacccaagcccgtatatgggccgtatatgggcattatagtatgt
ggaaacatagcaaggaaactgactacatgcagtaagggctgagcatatgctgtgacattg
ccgtttaacagttcagtttccctaccagtattttataaagatatattcactgtataaagg
ggtaagttttgtgaggacgtttgcatttcgagtatattatgtacttgaatgttttcatgc
cagttaccttctcctgagtcctcttattttccactaatttcctttctcttcccacatagt
tcctatctatttttcgtctacacattgtatcatatgttgtgttacatgcaatgtatgtac
atatgaggaaaatacaatatttgttttagtctgatgtattttacttaatatattgatctt
caattccatcttttttttaacagataaaataatttcattgttctttatagttgactgaaa
ctccattgggtacttataccatattttctttatgtgtttggctgttgatgagaatctagg
ttattccataccttggttatttaaatatgccacaataaaaacatatttgcacttgcttct
gttgcaatttgacttagactcttgggtacattcctaagagtgggacagctggcatctgta
cgtctagtttttcaaggcttctccatgctgatggcagtagtgcctggattagtttttatt
gcagcagcagttacaaggattctcttttcctctctcactttgccagcccgagttgttgct
tgttttcttagtgttatccatgctggctgagttgaggtggaatttcaatgtgtgtgtgtg
tttacagatatattttatatttaatcatgtctgtctctgtgtgtgcatgagagaaggttc
ccatggagtccagaagaggctatcatatctcttggggcgggtgttccagttgggtgctgg
gaacagaactctggtcctttgtctctcagtagtgtctcagtgtagttttcttttgcattt
tccagatggctgaggacattgaacatcttttctcatatctattgcccatttgaactacct
catcttttgagaactatctgttgtttttatcactccatttgttgattgaataatttgttg
gttttgtcaaacattttggatatcattttcctgtcaaagatatagctggcaaagcttttc
tccaaccctcttgtagacccgtggtcctcagtcttcctcgtgctgagaccgtttaatagc
tcctcatggtttggtgtcttccaaccataaaattatttttgttactagttcatagctata
attttgctactgtcatatttctgatgttcttaggtgaacccctgtgaaatggttctttga
cctcaaaaaaggggttatggcccacatattgagaacttctgctgtagactctctttactt
agttaattgtttgctttgctgtgcctttaaatgcaagccctgtttgtcagttttatttcc
tgaactgatgtaatgttttttgttttttgttttttttaaaaacctcacctctcttattta
agtattttctttatgttttcctctagttgtgtcaaagttacagaccttacattaaagtct
taattgattttcttagagaaagagggtggggggagtgagagattgagatctgctttcttt
ctttctttctttctttctttctttctttctttctttctttctttctttctttctttcttt
ctttctttcttccttccttccttccttcctttctttctttctttctttctttcttccttc
ctccttccttccttccttccttccttccttccttccttccttccttcctttacatgtaga
tatctagtttttacagcacactgttaaagagactttcttttggcatttttaatcaaaacc
aattgtcttgggcaggttggttttaattctgatttctagatcttcatttccACCAATCTG
TATCATTTTCGGG
Primer
(+)ggagtccctagctctgtctgaa
(+)CCCGAAAATGATACAGATTGGT


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