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Human element [ hs1914 ]


Position: chr3:37,810,701-37,814,504 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: ITGA9-AS1(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CACCCATCATCCCAGCTACTcgggaggctgaggcaggagaatcgcttgaacccggaaggc
agaggttgtggtgagctgagattgcaccattgcactccagcctgggcaataagagcaaaa
ctctgtctcaaaaaaaaaaaaaaaaaagctaaaaatatcacataccaaagctgcaaatta
tttctttaattttgagcgacgttaatccacatgatctaaatcatacattctcacacattc
tcctacttcaaagctttccctggttcctattaccttctgggtaactacctccacccacgc
catgtgtaagacttgtcacatgccctcctctgtgtccaggcccatctcccctgcctcagt
tctggccactgctacccagcattcatccagtgcttgacctgtgttgaactccttggctct
ctagactccagtctcaagtttgcccctctatgcttttgcacatgctgttctcttcctgga
attcctttctccctcctccctttactcctgagaagttttctttatcctttgcgatctacc
tgcaatgccacttcctctgggtcagatatgagaggggctgacttcctggtggagggagaa
atttgtagacaagatttataatctcattaggagctgtgctctgaggggctgcgaatggat
aaacagtgaggtggtggtcaggtggtgtttgggcttcagtatgtggaatagctactatgc
agcctggtgcaaggaagatggagtgggacagagcatcctggtggggattttcgagatgtg
cttctcagacatgacaggttacttaacctctctgggcctcagttttctcatctgtaaaaa
ggggtggaatttaaggagagcagaagttaaagcttatctgtcacatccctgataaatgtc
tctgtgctgctgttctagctggttgaacctcaaaaatgtcccagtttagacaataaatta
tatggtcacccttctgagagcagtaccctccacacatgggtgccgtaaggattcagcata
tgccgttctctaacatactaatagcacctaatattgtattatttccattgatatctgaac
tcagtatagagatgggaccataagcgatttcccaggatgatgtgcttggagcatgacact
tagaaaaaagatcagaggacttttctgcctcttcagtgttcaaacccaggcacagggact
gtgtttggctgctctgtttggggccctgtgggaggaaacctgtgtcctctctcttgctct
gagtcaacagacaactcttagaagtgcctgactgagcctacaacatggaaatgccatttc
ctccaagccgtttatctgaccacctcagcctggaaagtaacagctcttgacttcccttct
ccacctgggatcagatgacgacaacatttgaaacaaagggtctgctctctttctcagtat
cacacctatggaatcagccctgattcacacttcaaacccactacttcatgaagcaaggtc
ttgccagatcccctagagtgaacaggggattctttatcctctcacaggcctggcaccgtg
gtggcttctgaccatgacagctcctttcactgaggctgacccagactctgccaccaagtg
atggccactccttgggctcccacagccagggttcctgacagcttccccagtcaccaccat
ttcatggtttcagtttgcacaatgtcctctttggggtaaaggggaggacagatgccaaca
gaaaaccctcagtacctgccttggtagaatacagccttgtcactgtgtcctgcatcctcc
tttccttgtttgggtgcctggtgaagtccttttgttcaaattctaatagccatggacctc
tgccagctcccagaggccctgagagataagcagccatgtcatgagaagcatttggactcc
ggtagcctgggaaataaatgaggactgactgggcagagaagagcaagggggcgatggcca
cagagtccttagccagccaaggaaatgacattgttggtcattggccggggatgcttgggt
tgtctgcaacacatgaaaaaagcatcatgtccccttgactttgagcaaagagtgcggtta
aaaccaagttgtgggaggatggatagtcagtaattgtttatctgtgtgatgagataaggt
agtcccctgctgtaatgaaaatgcacagacagttcatgaagtgaggaattagcaactaag
gacaacctgagtgactacatgggccaacatcctcatgtgtagatgaggaaactgaggccc
tggagacccaaactggcacggctgttagcaggcagagctagggctgaagccaggactatt
gagtattcatcaagagcgtctgtaccacagaacttcactggggcccggacatgaccttgg
acaagtcgctgaactcggggacctctgtttccttatctgtcagctgaggccacaaggact
gcatgatctcgcagctgccttccagaaacaacattccagaatgctctgttccccccttcc
agcccaagagactgtgcagaataggcctcttctcagtcagcaggcacttttgtctcccat
ggtctaggcaggagtcatttttttttgctacagtggtggaaatgggtcaggctggagaat
gctgaggtttccaggctagtggtttcttcctctgaccacagtaagaggaaaggaagcttt
ccctccacctctactcctctgtgactcctgccccagccccatcctcagcttccacctaag
aggtagtgcaggaaagtggtgataagcagatgtctgcagctgtgtgacgtgtgtcccagc
ccagttctgtggcctgctacctggggagcctctggttgtaattgggcctcctgttgcctc
tcagcttgcctccatctgtaaaatggggacagtaggccaggggctgtggctcacacctgt
aatctcaacactttgggaggccaaggcaggtggatctcctgaggtcaggagttcaagacc
agcctgaccaatatggtgaaaccccatctctactaaaaatccaaaaagcttagccaggca
tggtggcgtgtgcctgtaattccagctactggggagggtgaggcaggagaattacttgaa
cccaggaggcagaggtttcagtgagccaagatcgcaccactgcactacagcctgggtaac
agagcaagactccatctcaaaaaaaaaacaaaaatgtggggacagtaatagcacctgctt
cagggaactgctgtgaggactgaatgttaatgtgtggaaagcaccgagagcctggcgtgc
agtaagggccatgcaagtgttaggtgccgttgtcatggctgtcacattggtacctgttca
acacacttagaggaccgcctccctccaccttgatgacccttggtaggtactgagttcctg
agttttagctgaggactgaaggtgtgactgcaataggattagctggtctgaatcagactt
atgtagcaccaggcaaccttcaatctccttttgaaaggggaccaccctgaacctttcaga
aaaacgttgctttccccgattgaagtgattcccatgtaaccacagtcgggagcacaactg
gccaagattttcattcaccgcagactcagtcctcatttcccctttccagatcccaccagg
ggcagatgaggtgtcacattgcatcacatcacgccatcgccattaccctgttcacaggcc
accccagaaactcccggcgggagacagaaactaacttctgagctgtgactctgccccttg
gggtTGACACTGAGGCTTAGGCTG
Primer
(+)CACCCATCATCCCAGCTACT
(+)CAGCCTAAGCCTCAGTGTCA


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