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Mouse element [ mm1913 ]


Position: chr13:15,649,876-15,654,672 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CAGAAGCCACAAAGTTGAAGTGatagtctaagaagggacaagtgtgctaagaagggacaa
gtgtggtcctggccatgaagtgggatggtctgcggagacaagtgggaggttcggttcatc
tggcaaggggtgggtagaatgtagaaagagtgcatacctagcaggctaatgtagctgccc
acctaggaggctccctcctcagacactgtggcccagacatggagccccactccccgaaaa
acattttataacatagcctctacccttgaacttctaaatttacgtatttcatgagatgtt
gtcaagacttctcttttgatagatgaggatatcaaagcccatgggagctgaaaaagttgc
ctgttttataaggtgtgaacccagttttacttaaaatctgaggttcttcacttgtgatta
ataactggcaatttcaaagatggtccaaatctatgcaagggccagttctgatgggcactg
tgtcagactgactaactagaggacacttagaaactttgtctgtcttaaggccgtagtatg
gagtaatgacagtgctttatgtagacttggggtgcaggtgtttttggggtgctgtctggg
tgcaacactaggatgaagaggcttgtggttctttttgttatttggctccatcctagtgtt
tgggcggctggttctggtcattcttaccccccacccccacccccgtcaccaccaaaatat
cttaatttatgttttgatgtgtgtgtgtatgtgagctcacgcatgcaaatgtggtagctg
tgcagtccagagaagtaatcacattctctggactgaatttcagggcatggcatggggcgc
caaactcaagtcctctgcaggagaagtaggtgtgacttctttgcagctgagtcatctctt
catccctaattttggtcatttttacctttgtgttcaagtgggtatgatgtggaggatcat
gaggaacttctagttaattaatactttctcaaagaaagtgaggttacatataacttaatt
ataggaaggctctgggttctcttcgtgctccattagcaatcacagtaggcgcctgtgtga
agtacttacttggctaatcgttgttctgaggacctcactaaacaacttttgtttgtttgc
ttgtttgtttgtatagaaactcattttaccttgaagaaattgagggtcaggtagacctcc
tgaagctgagctccaggcctggggtttgggctgaaggagggaggtcctgggtgcatggct
tttctactttgttcccccaattgtgctcttttactggtttctcttgatgctacagtagta
gcactgggaacacagggcctctttggaccaaagatctcctattatttgacctccagttct
aaagaacagtgacaatgtattagggactttgctatatcaacaaatggcacaataactggt
gttctttatacattttctgtacatagagccacaggtaacatcaaggtcactcagtgacgc
ttaatctgcccttctcagtggcttttcgtagggcagcaacctttccctgcatcagcaggg
gaggaaatgtaagggacaatgtaccaactttagctaaatacttggggtttttatttggag
ggttacaaagtaggggacacctaaatgtccagtggtctcactaagatggacaggacactt
cattgtttcttgactttggcatctcagataaatgattgagggaccagaagggtaatttat
gagaaaagatgaaaaagacaatgtggatgacaaagcttatgacaaaacctatacaggctg
aagccagacatggcaactcctgaccagtcactggagaaagacactgagtggaaaaaaatt
gtggcgccaactgaggaagcctctggcatcttctgcttattcagggacctgcagctaggg
ctgctgtttgcattaaatgtatccatgagctgttagtgtccatgtgtctaaagttgcgtt
ccagagacttacagagctagattcggttctgtgtaatccagacacatgctataacaatgc
cccttctgtgtctgcaaggtaaggaaagtgaacggcgtcgagacgtgcagagcgactgtg
atcccctgagcaacctttagccaaagaagtctccaaactatgaaaaaacgattacaagct
tttaagagaaagcagagggatggacgccttagatatgtttctgcctccctccccccatta
attgatctctacattcagctcttggttttatattttcgggagagaaagtatgaaacaaca
cacgaaaacaatgaagtcacatatcgacaggtttgaactggtgagatgaaaggctcaggt
ctgatgagggtgatttctgattccaagggggatttttacaacttcgctttggctccatgg
caaaattaaatccagtatgaaatttctcctaattaacatttccctccaaatatcaaattt
atggactctaagaaattcacgtagcacacatgccagggcccgctttctttctgcttgatc
tgttccagctgttattagctttcgtgtctgacgatcattaatttatgaggagttctgaat
gcaatctgaaatgttcccctgaattttagacgtttgagggcagactttgcatgagttcat
cttgatccttgctagtatttcagtgtgctggctctttgctccacagtaacccttcagggc
cttcctatggtgacattaacagtgtgcagctattctttatcactgctgattccttctgtc
ccttacccgattagtcaaacctctacatcctttggatgcctggttggcacatagtacatg
tccctaaaatccaataaggacagaagtgattagtttttgtttccctccctccctccctcc
ctccctccctccctccctccctccctccctccctccctccctcccttctctctctctctc
tctctctctctctctctctctctctctctctctttctttctttctttctttctttctttc
ttttcttctgttcctaccttctgattacccatagtacaattttatttcttggttttgttt
tttcaccaaagctgttaacaatgtatttttttttctatacctttgtatgtcttatagtgg
taacagattgttgggcatatgacattcaggtttaggtcactaacactaggctttcctttg
tatgcttggctgcttgaagttactgtttcatatgggcagcactgtggtcttgttaagcct
agagacatagtggtcagactaatgggtttggagttgcccagccaaggtagaggtgagtgg
tccctcttcacattgcctgccccttctctgctggctggttttgttttgttttgttttgtt
ttgtttttccacttgatattgtgtcatctgagaatggggggacctcaggtaaaaaaaaaa
tcgttccataagcgccataagatcaagctataagcaaacctgcaaggcattatcttgtaa
gtgattagtgtggaaaggtccagctcattgtgcactgtacagtctctggattgatggtct
tgggtgccatatgaaagcagtctgagcaagcctgcatgagtgagtaagccacattctttc
atagcctctgcatcagtttctgcctcctggttctggctgtgagttgctgatatgccttcc
ctcagagatggtcagttaaatgaaatgtaaatcatttcctgcccaaattgtttttgtcat
cgtgttttattatagcaatggcaacctaacaaagacacctctccagagaaaaagtgtcta
ggaacctcacatttcctttttggaattctcctctaatggactattctgtgcttattgttt
tcttctaatcattttcttttggtaacagtgcagccttggatttttgaagccatgctcttg
ctgcgttttcttgcataatgagccactaagtgtgtgtgtgtctctaagtcagtggttctt
aaccttcataatgttggtgatgtgagtcagtggttcttaaccttcataatgcttccacct
tcaaatacagtttctcgtgttgtggtgatcccaaccataaagttatttttgtttctactt
catagttacaattttgctattgttatgagttgtaatataaatatctgaatgcgagatggt
cttaggagacaagagccccgtgaaagggtcacttgacccacaaaggttgttatgatccac
aggttgagagccactgcctgaaggcgtacattcttttgctggtttgtgtttagcattaag
attccagttccaagcttcatcacttagagctgggtgataaggcggtgacttgcccttgtt
ctcagttgtcctgcagagtaaaaatgtggtgttggtacgagccagctccgctgtacttga
ccctagagttgaggtgacttggtgtgcttatgtgcgaggccacatccagattgagaagtg
cggtgcttggattgttcttctgagttaatgaacttggcagtagagcggatggctgtcctc
tgggtacgccatgtcctttcttgtgagctgactgtattgaggaccaagggagcatcttta
cttctcctggagtccctagctctgtctgaatgccagcctccctttgccaaagagcctgcc
ccgcagagaagcagcaacaggccagagactcagagcttttcttctttcccttaaaacaga
tcaagtgtggttttgtatcttatttatgttcttaagtgaagttttaactacatttattta
tctgtgtgtcaagggacacactggagtcaatgctgTCCTTCCTCCATGTGTTTTCTT
Primer
(+)CAGAAGCCACAAAGTTGAAGTG
(+)aagaaaacacatggaggaagga


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