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Mouse element [ mm1910 ]


Position: chr13:15,614,157-15,618,721 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGAATTGGCTGAATTCCTAGTccctgaagtcagggtgcagctgtccttggcaagggtgc
tgtagaccttcatgcaggtctcttgcccgagggtatctcttttgaaggtagagactagta
aatgtctttcatgttttggtgcctcagctttcacagacacaaaaggtgtcacaatggtta
gcgttcacaaagctcctgtgagaatagcagaaatagaaaagggaaggtaagactctccac
agttactgggttagaaagaagtgttactctaagtggtcagttgaattcattttatttaaa
gagaactctgaggtctactgctactacaccacagcccactcacaggcgacagttttggag
gtcatgcccggaggctaagttaggacagtggagaagccttggccttgggcatttgtcttc
gttcgatttgctttgctgtgataaacactatgaccaacagtaccttggggaggaagagtt
tatgtggcttacatgtccaaatcacagcctgtcatggaggaggtcagggtaggacctctg
caagagctgaggcaggaactttgtaggaaagctgcttactcaccatggcttgctcagctt
gcttcctatctaacccagacctctctctctaacagtggcactgctcatgcggaccatata
ctcacatcaattactaaccaaggacattcccctgtagatatgcccgcagactaatctgat
gaaaatatttctgtaattaaggttccttcttctctagggagtttgtgtcaggttgacaag
ctaacccgcacaccctccaaggctacaacaattgctcagcctgcaaggagttccttggag
accaggatagagggagtgggacactggaggagaattatgtgtggaataattttttgagat
catttaatatattataatgccttctcactccctaaatatgctggttcagagaaacaccat
ttacccagtgcctttgggggactccatgtcaagtccatggtgaccatgcatggtggtaat
ctacatccttaactgtgggctttggtgagtctgataggacatgcaggatcacctttcctg
tgtaaaaccacactggagatctagcccaaaggagagttagatatgaacagcagatgtgag
tcctgcagacatgttcttcttggggggctattaacttgcttttgttcttagagacattag
gatacctgtttaatatttttggaaataaaaggatgccccttttctccaaggcatcattga
aatgtataaagaagttgagtaaaggcagaccgtgtctcagtcctcagtttcttccctcct
gtgtctccagcctccattatgggtggtaatggcagaggttttctgctggtgccttagctt
taacatagcttttggaggaacctttggagactggtgagcgatagagaatcattacagccc
actaccaaggcctgctgtttccagatatctgttttcctctctttacattttccttgtcct
aaaatttgaaaactgttgaaaaacattggaaaaaagaattacagataccccactctccgt
ggaaatataaattgttaccattgtatgcatttccttttaataattttctacacatgtgca
cacacaccattatttggacacagtgaggaggactgggaagttctttcagtttcatcccct
ctgtccttacattcattatctcctgcctagttccccttgtagaaaggaaaggttttataa
aatcttgaagattttacctaagaagaaactagttcaacttacagaaggaagaatagttat
ttagtgacacctgtgacagctacttctatggtagaagacagtgaaaggacatcgaatcca
gagttctgagtgaacttgaaaatgccccagtcaaggacgccttttacacctcctagcagc
taaggcgagaagcagatccatcactgtggtgactccaggaagccactgcaccgatgtgag
tgtcctcttcgtgcacagggagggataagtgcacagccagccactagatcgtctgtgttg
tcgctgcagggagaagccaaagctgaatcctcctaggttatgtttttctggggaattggg
ttggactggagtcagctcaccaagctaattccttcttcccatctgccacaggggattaaa
gagaaaatatatactcaagcaaatgctagattgtggcagttggttactggctgtagccgt
gttggcatcactcatgaaccacaattcttctaaacgacccacagctttctctataagaac
tgttatacttagtctcgaaatggctctgaaataaacacctttatttctaaattgaagtct
tttattttttttctttaaatcaggaaatacagcataattaacttttagagacagacttcc
ctaccccagtccatttagctatggggacaaagatgaccttgaagttgtgatcttcctgcc
tctgcctcctgagtgctgggatttcaggtgtaccactatgcttgctttatgtggtggtgt
acacggagccagggcttcatacatactaggctagcactctactaactgagctacacccac
agtcttctttctgtttcactgatgttatttttcacctattgtttgttaattaggaaattg
ataatctgcattataagtttggtcttcagcaagcatcggtgtagctaagagtctgaacag
aatgtacattatttgttattccaggtgcctatctggggaggactgggttacttgggcatg
tgtctgagagggcataggtgtcactacactgtaaattcaacgttaaaccttttgatttgg
tattaatgcagaaaaagtaatgatatttcagttctactgtttatgataccgtgatgtgaa
actaggctcatcttgttactacattcaccactgttcttcagttatttggctgtgcatgcc
ccacagcatttaggggattttgttatggaatgacattttgttgcataagtgtctctattg
tactttgtaaaattgtaatgtggcctggtgacaagagtctataatcttggctgcttgggc
atctgagacaggaggatcatgcatttgaaatcaatctgagctatagagagtataaggcag
ccctgagtagctttgtgagactatatctcagagtgtccagctcagcctagcagacatgaa
acctggggtttattttccaggatcacacatacttaacagagccatgaacctcatttttaa
ggaaggtgaactttgagaagagtcataatcttatctagatgaacatgtatccatggagca
atactgaaagcattaatctctcccttagacacctgacttgttaggagtgaagcaaagtag
gtgcctgctacttgaatcttggaactgtcttaatctccagcatgtaatagcataataaat
gtgttgtttttgatttcttgttttttttttttccgttttgacactgctcttaaacttcac
acagtcaatgtgtagtggaaaatgctcactgtcttgctgtataatattcctttttaagat
gctgctacaaattatgaatccatcctactgttgatgggtatttgttggattcaagttatg
tagtatgaaggctgctactgcagacatcctagtgttttagtgcctctggtattcaggata
gagctgactctccataatgtctaagggctgcatctttgtttgcttccactaattttttga
gtaaagagcaatagggacttgtaaggaaaggcagtttttttgttgtttgtttgttttttt
gtcttctcccctccttccttttattttattgtgaagaagagtaatgacgttttcctaata
aggtgccgccttgaggctgggctgtgtctcagtgaagacactgctaatatcctgctatct
tcttccttattacttatctgttcttcctgatttccctactacactgaggcatgggacgtc
ttaggaggacgggctagactggctttcttgtctataaacaacctccttagattgctagtt
taatgtgaagcacatctatggggtaagaggttgagtttaagtagtgtgtacacatgagac
aggtctgaccaaggcaccaaatctatacagtgctgcattgttagattaaataataataat
aaaaaaccaacaaaaggcattaactttttttttttttaacaactgtgttttatcagtttt
ggagctccactcattctaggttttgagcagatgtgagttttaaagtcctgtggtaaattc
agtcctcatcagagataaggtaagaggctaagagttaacaaagcaaatgaacagcaccac
cttcatgtcccacataaaattgcccttaaaaggagtggccaggcagggctacctttcttt
ttctctgtgtgtcctagtatcccttagtatttgtagtgagaaagtcttagtcttgaaggt
gccttcttttgctctataggtttggctgtatctgtgtataaaggtagccagtgcgtcaca
tatggtggccacactgagtctgatgaggaaaggaggccactgtGTGCTGGTACATCTCCA
ATTCA
Primer
(+)TGGAATTGGCTGAATTCCTAGT
(+)tgaattggagatgtaccagcac


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