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Mouse element [ mm1909 ]


Position: chr13:15,618,591-15,623,241 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GAAGGTGCCTTCTTTTGCTCTAtaggtttggctgtatctgtgtataaaggtagccagtgc
gtcacatatggtggccacactgagtctgatgaggaaaggaggccactgtgtgctggtaca
tctccaattcaaactatgaatcactgcatgcttctttcatgtgcatgggctggatgtgaa
tttccacagcagctcccatgagtatcggacagataaaacattgatgctagaagaggtctg
cagcgtagtagttcttgtctatttttcttgatctttctgttattcactccgtgtccatct
ctttgatatactttaacatcttatctgccagtaaattacattagccttaagttggtgaat
agaactggaatgttcttgaacagtaatctggaagccattaaataagagcataaaaaaaaa
aaatcaaaatcagaactcagagttatagtcagtgccagagcataaagttctggttctatc
cccagcactgcaaaacaaaccccaatcctgataagatgccagcctagggaacttgtgacc
ttgctcatttgtttcccctcctgtttggagttagatgctttcactttgggcatcagcccc
cgttgtcagggtccctaagaacactcccgcatctttgccttaaagcctgatactaatcat
agggatgcctgttgctgcttatactgcctcaagaaactatcacacagcaccagggtcttt
accccgtcttctccatgcattaatcttttcatctttggattcccatggagagcctgcttt
tactgtatgttaagactctggagctgagttctttccccagtcctcatagagctgcactgc
actggtggaggtgtgcagtccagcagttggttaggaaactgaagactgctgggctcagtg
gctcagaggatgcgtggaggggctcctatttgagttctgacactagtaaagcattttaga
gttggccttgtagacacttgggcttcccaggacattcagctagagaagtgactttgaagc
aggactgtgaagagtgctgtcttccattttaccatcacttcagtctcaagtgctgtgtga
agagtttgctttcggactcaaaattaagacaggatcgaggtggtgtttgcattctcaaag
catccaggctgcagtgtgttggatttttctctgtggtttgaaaccatctttgtaaaatga
ggttccatcttttagatgtgtcttccagaatattaatgtactcagttttcagatcaatgg
atcacgtgtaaggagtcttttaagttccccttttaaagtagggggagttgaaggctagaa
acttaataatgagacaagactgaggcacaccccagggtggagagagactcccaaagatac
caatattggactgtgatatggtatgataatatgttatttatgtctttgacctaagcactt
aaatcaagccaatccaattttttgtttgtttgttttcttatttttaagtgtccttgtagg
aaatcagctttgtttcaggggtagatatttttgacaaagtcatttaagaaagaaattaaa
taaaatttcttataaccccagaaactctgatacattgttttagctcttagaaccttcagc
tgaaaccagacagttctcaattgttcgggagctggttttggcagatttgttctttttcac
tataggagggctgctgtaaagctgagagttttcagcagacttggaggatgtcagagcgat
ttaaaagttgggcctgtcaacctttcttcactgctttctcttgcaaacatgaacatgctt
ttagaaacagatttcatatataaaacaaaacttttctttagatcctttaaatgtaaatct
gacttaagttttaaaacctgccctgtttagggcagaagaacttttagtacttattcttct
gcttattttaaataaattataacatattttcccacactttgttcccctattcccaccccc
acagtacatttcaagtttatccatgtaggatcattgaaaagataaaaggatgtatgattg
gtaaagatctttttcacaatttgttggctgctgttttgttctatggacagtgtcctttgg
cttacagcagctttgcaattttatgaggtaccatttgtctattattggtcttagagcata
aatcattggtgttctattcaggaaaatttaccctgtgcccatgtgttccagactttttcc
cactttctcttctgttagtttcagtgtatctggttttatgtggaggtccttgatccactt
ggacttcagctttgtacaaggagataagaatggatcaatttgcattcttctacatgctga
ccaccagttgatccagcaccattagttgaaaatactgtctttttttcaactgggtggttt
tagctcctttgtcaaagatcaagtgaccataggtgtgtgggttcatttctgggtcttcag
ttctcttccattgatctacctgtctgtcgctgtaccagtaccatgcagtttttcttacta
ttgctctgtaatacagcttaaggtcaggggtggtgattcctccagaagttcttttatttg
ttgagaatagctttctatatcctgtttgtttgtttgtttttgtttttttaaattccaaat
gaatttgcaaattgctctttctaactccatgaagaattgagttggaattctgaggggatt
gcattgaatctgtagattgctttcagcaagatggccattttttactatattaatccttcc
aatccatgaacatgggggatctttccattttctaagaccattgatttctttcttcagaga
cttgaagttcttgtcatgcagatctttcatttgcttggttagagtcacaccaaggtattt
tatgttatttgtgactattgtgaagggtattgtttccctaatttttttttctcagcctgt
ttatccaatgagtaggggtaggctactgatttgtttgagttaattttatatccagccact
ttgctgaagttgtttatcaagttaaggaattctttggtggaatgtatacaaaaaactcaa
gaagttagactctagagaatcaaataaccctattaaaaatggggtacagagttaaacaga
gagttctcaactgaggaatatcaaatggccgagaagcaactaaagaaatgatcaacatcc
ttagtcattagggaaatgcaaatcaaaacaagcctgagattctacctcacaccagtcaga
atagctgagatcaaaaattcagatgacagcagatgctggtgaggatgtggagaaagagga
acactcctccattgttggtgggattgcaagctggtataaccattctggaaatcactctgt
cagttccttagaaaattggacatagtactacctgaggacccaactataccactcctgggc
atatacccagaagatgctccaacatataacaaggacacatgctccactatgttcatagca
tccttatttataatatccagaagctggaaagaacccagatgtccttcaacagaatattgg
atacagaaaatgtggtacatttacacaatggagtactattcagttattaaaaacaatgac
ttcatgaaattcttaggcaaatggatggaactagaaaatatcatcctgagtgaggtaaac
caatcacaaaagaacacacatggtatgtactcactgataagtggatatttgccccaaagt
ttgaaatacccaaggtagaattcacagaccatatgaagctcaaggagaagaaagaccaaa
gtgtggatgcttcttagaagggggaaacaaaacactcatgggaggaaatacggagacaaa
gtgtggagcagagactgaatgaaaaaccatccagagactgctccaccagggaatccatca
ccaatcagatactaatgtagatgctgagaagtgcttgctgacaggagcctgatatagcca
tctcctgagaggctctgccagatcctgacaaatacagaagcagatgttctcagcaaacca
ttggactgagcatggggtctccaatggaagagttagagaaaggactgaaggagctgaagg
agttttcaaccccataggaagaacaataatatcaaccaaccagagccccccaccccgagc
tcccagggactaaatcgtcaatcaaagagtacacatatagggacccatgtctccagctgc
atatgtagcaaaggatggccttgtcaggcatcaatgggaagagaggcctttgttcctgtg
aaggctcaatgccaatgtttagggggaatttcagggtgggaggtaggagtgggtgggtgt
gagaacaccctcacagagcagggtatagaggggttaggatagggggttgccaatgggaaa
atcgggaaatgggataacatttgaaatgtaaataaagaaaatatcctataaaaaaagaag
aggtaaaaggaattttcaagaatgtagaaattctgtattaaagccattcaagtttgagtc
atagaaaaggagaggcaaaacgaacattcctagccagagtgagggaagagcaagctaggg
acaagcaaaggaaccattgactgtccagagagcggttcttaggaacattatagaaaactt
attagtccaGGTCAAGCCACACAGTGTTAAA
Primer
(+)GAAGGTGCCTTCTTTTGCTCTA
(+)TTTAACACTGTGTGGCTTGACC


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