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Mouse element [ mm1908 ]


Position: chr13:15,610,282-15,614,935 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GCCCTTGTTTATTCCTCACTTGacctctttcctttggccgaccaatgtccattgggagaa
aatattctctcagtgtgaaatctagccctctttatgtgcaggttattttgttacattttt
cttttctatttatttgttaattaattattgattatttttgttttttatttttgtttgagc
ttctgttgtggaattttcattctttgttccctctgtctcttacactcatttagctctgta
ggggctgaaattccttattattactaatttttttattactcaattgagggactcttgaag
tctttgctgacacccttcctaacctctcgtcacacagttcccactattcccatctatagt
gcactgaacatggcttttcccaggggcctggaagccccctcatggtggaaatggattctt
agcttctgtgttaacacctttgtgcctaggaaactgttgatgagtctgcttggccttgac
ttttgtaatctggctatttaggagcctgtgggcagagagaggagtacctgggctctttct
taagccctgggagcatcctgaagcaggagctaaggagtgtgctattcaagcagatgattg
gtttccttcctttccctaaggatccatcgcagagagggtttaagctcgttcaagatttgg
tagaacatacctttatggaaatactcactgaattaggttttaggcctttttttcttttcc
tcaggctaaaatagaagattagcatagacacagataaagtgagcagactgcctaggctaa
gctcagacaggagcctgctttctgagcaggagatggggtacggccttccgggcatcagtt
ggcaggtgtacatgcctgtattgtttctaagtacgaaagcatagagggaagggaaaagag
tgggagaaagggagagagggagacaaaagaccaacaggaactccatgttcacatgtgttg
ttgccatgaaggattttgtgtacttaaacaatgctaggacccatcgggacgcatcatgcg
gaattgtggagggcagtctctgcacctctgcttgggatcttgtgtctatgtcttgacgaa
ccttggaagatatctttgagtagtccttgtactacttgtgggtcacacataatggtaatg
gtgctgaataaatattcgatcaaattgaaggctgattggctaaccccttgtttgtcactg
tctttgtgtggccatctttctccaccatcatgtgacttgtaatcttgttgacaaattcaa
tcagtacaaatatgggggtggacctgaagactgtgccactcaacttatgcaatataatcc
atagatgtgagcttattaacctttgactttgttaagtaaatttagggaacgttcttgctt
tccctaagcttttgttgtttttctttttatattttatattagcaaaatgagaataataat
gtatgtgttgaggatttaaggatatcaaatatgcagaggggcttgtggtttgacatgcag
tagctattcctggatatattcattatggtatacaactagaatcatattctcatatagcaa
tctatttttaaacatatcctttctatatatattttataaaacataattcagattcatcta
tttttataagccatgttcctatttcctgtattttataaaatgaaacaggattgcaggggt
agactttgtttacttagcttgtaggacacaggagcacacatttcatacactgttggccca
gtgagtgcacttcctttgtattgacctctggcgtgacaagtacacagtgacatggccgac
acacagctgactgaagatcatacatgtggtatgcttttgatcagatagtcacaaagtctg
ataattcacaaagtttcatggcgtactgatatcagatagcaggctgcataggcccagatc
aggtgagatcccttcacagacagacttcctgtcagcatgggttctgaggctatgctgtgt
ggacatctatgacatgctgcttgtgtgtcctcttttccccctcctggcaaacccactact
gtctccatggcctgcagacaaggaaatgcactctcagagttcagtgtctggcatgagtcc
tgtacagtggctgccaggtcttgaaccctggcagtcatatggcatgccctggctgtcacc
ctctgtgtagcctggggagaggttgatgaatacagtctatcaaaaggagctgtgacttgg
gggatgaaagaagaggtccgtgaacacacggatgttcttttgttagtaaattttgcctta
gttgtttgctatatgtcagggaagagccactgtgaactcccagtttctctggcagagctg
atttatgaggattttctcagatcttccagcaggttaacaacgtggagtcttgaaagcttt
caagaggggaaatgaataaacaggtatttgaggtgaagccgaccaagtctgtggagctgc
agaaaggtgaattaaatccgttgaaaaggcttggataagaatttcacatgtctcttgacc
tagtaaatgagagtcaggaatctgactttgtaggtcagcttcctgattcatgtagataga
acttgttagaagaagttttatttggcggagatgttacatggctttagtggactaaatcag
tcaggaaaaacaaaatgaactgtccagataaaatcagctgagaggcaatccttacctcac
ttttaagttgaattacgttgcccctttgacatttttgaacagttataatggttatatttt
gcattctatcctgttcttgctttatacatattcatgttttcttttaatccatagaatacc
tgaaactatgttacactgagttttttaaaagacaaacaccagcaattgtttactttctgt
ggcctgttttggccctttggaagtaatataaaacacacgcgcgcgtgcgcgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgcctgcctgcgcgcacgtgcatgcatgtgcaagtgtatttgg
tagaattaagagtgtgtcaagatttctataatctttcaagcactcagaaacaaaaatttg
tggtgaaggtcaggtatgacctgacaaaccgagactgacaagctttggtttttttttttt
tttttttggggggggggattgtgaaaatgtccatttttttccccttgtttcccatgtcac
ttggcctgtggagttaacaggactcttctgaggaccagtggctgcattgctgtggatggc
actcctggagttttccaaaattcttttttcctcaggggaatgagtgattcagaacatcat
ttgtaaagttccaggctttgttcttagagttttctgacagtccatttgtattcattattg
atgtattcaaaactcgtgaaaggagcctgggagattgagaaacatgcttataagcaggat
aaatgagcaacttttgacagaatctaaagtgcccaggcatcctcacccttggagggtctc
caaactctgccaagggctctgcccagacattgcacaatgtttgcagaggtgggaattgat
gacaaggaaggcagtataagatcccattggcatcatggtggtctacccaggaaaaagttg
gttccaatacgaggaggggaagagtgtgaaaagtgttggaaagtgagtgtctggggctct
tcagttgattgtgtagaacagctcatacccatgtttgttcccctcagtgaggttgaacca
gcctgattcttaatgaaggctccatctctccatatcagccaggcattgggtattccatga
atacttaccatgcctcttttccagggagggtgatgcatacgagcattaagtgttgtcttg
acagtttgacttgccaggaagagaggagtaccaagtggaattggctgaattcctagtccc
tgaagtcagggtgcagctgtccttggcaagggtgctgtagaccttcatgcaggtctcttg
cccgagggtatctcttttgaaggtagagactagtaaatgtctttcatgttttggtgcctc
agctttcacagacacaaaaggtgtcacaatggttagcgttcacaaagctcctgtgagaat
agcagaaatagaaaagggaaggtaagactctccacagttactgggttagaaagaagtgtt
actctaagtggtcagttgaattcattttatttaaagagaactctgaggtctactgctact
acaccacagcccactcacaggcgacagttttggaggtcatgcccggaggctaagttagga
cagtggagaagccttggccttgggcatttgtcttcgttcgatttgctttgctgtgataaa
cactatgaccaacagtaccttggggaggaagagtttatgtggcttacatgtccaaatcac
agcctgtcatggaggaggtcagggtaggacctctgcaagagctgaggcaggaactttgta
ggaaagctgcttactcaccatggcttgctcagcttgcttcctatctaacccagacctctc
tctctaacagtggcactgctcatgcggaccatatactcacatcaattactaaccaaggac
attcccctgtagatatgcccgcagactaatctgatgaaaatatttctgtaattaaggttc
cttcttctctagGGAGTTTGTGTCAGGTTGACAA
Primer
(+)gcccttgtttattcctcacttg
(+)TTGTCAACCTGACACAAACTCC


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