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Mouse element [ mm1907 ]


Position: chr13:15,601,775-15,606,229 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTATGCCCCTTCTGAGTGTTTTctttgttgtgaattcatatatttagtcattagtcttat
gtatcagcttcatcccaacatttacagagtgcaatatgggcttgcttagcatagtttcct
ttattacactgtcacgctgttccttacaataagaactcctttgttattgtgatgcaggat
aggtaagaaatatttgaatgttcgtgttaattacttccagttctcaaatgtggatctggt
gtagaaccagttggagcaaatagttcagcagtttacacctgggatgtttgtctagggtgc
ttcagtcagtgtaactcgctcagtataagagatatgttccttcaaatagctaagatctgc
catctgcaaaaggtattatcccaccgctctggtgaaccgcctagccacagtgctattcct
cagctggcttccgcctagccacagtgctattcctcagctggcttaattgccccatctctg
tgtcttcctttggatggctgtatagctttccagtttctttcttcctttcttcctttcttc
ctttcttcctttcttcctttcttcctttcttcctttcttcctttcttcctttcttccttt
cttcctttcttcctttcttcctttcttcctttcttcctttcttcctttcttcctttcttc
cttccttccttccttccttccttccttccttccttccttccttccttgcctcttggtaga
acagtgttgcttggaaaatgtcagaaggtatctaaagaaccccttccccaatctcttcaa
taacacacacacacacacacacacacacaccattaacaactttggtgttttgtttttgtt
tgtttgtttttttttcccatacatcttatatcagattttatggttgagaaactataaaca
tgtttggtgatcaattatttgagtggtggagggctctgagggaagttgctgtggttctga
aagtggctgggcttgtttcagacactctcttctgtaacataaacctatggttttcatgga
gctctttggttctgatgaattgaaccacatcataaggccaaatttcatacctgggattgc
tgatgacatgctcaggcttgttggatcatttgcttaatgcatggtgacagtgaggctaaa
ttcttagtcattgctttgattaggcccctaccaggcttggagtgtctgctgcttatgaca
ggcagctgagcctaagaccccatgacagcacagatactgagtagacagggcaagccaata
agcttgacttggtggagatggcaacccagaaaatagtcctgaatgctgctgctgctagtg
gtgatggtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggt
ggcttacaagtgcaaaaagaaagtaggatgtgtaaacttctcgtatgcatttctgaattc
tttgagtgggtactggaaaagatgcaggagaccatgactgagagcctgggctaagagaac
agctcagtagcttagggttggtggtggaagaatcttttaaatggctcctgaaccttttcc
cacgagtcaggggaaaaaccaaactaaaccaaacccccccccccccaaaaaaaacccaaa
caaacaaacaaacaaagaaaaacacaaggagatattctactgagaattgcacttgtagat
ttcaatgtgtggattttgaagcactcatgaaacacaatctaaatcttaaatagtgaaagc
attttcatgtgagctacagtaataaagttaacacttcaggcaggtgggacccattggcac
cgggaataaaggtgctaggtggatatggcttttcggtgggctacctgtttgtacaggtag
ggtgggagccagtttatttctttgccagacatcttaagtactgtagcttgtacttcccta
gaggtaacaaggtaaaggttaacgtgcaggagggttattaggtgtgcctctgagatctac
acttggggaagggaggaagagcagtatgttaacaggcaagttcaagatgcaatagagttg
ccaggccactgttgctggtatatatgaagtatataccacatttcattcctcccttcatca
gtggaagcaatccattgtcatggtgtttgctgtacatggagcaaagccagacactgttct
gagtcttagaggttgagatctgagtcagacagatgacatccctatagtctaggaggagcc
gggacttctaagtggaagatgataaataagacagaggcctcagctccaaaatgatcaaat
aatatgatggctggaaaaatattggtggggcagtaactgactgatggctagagatatcag
gagtcagaggcaggggaggacttctgagtggaacatagagcacccaggaacaaagggagt
gtgttccagatcagaagcagagagtgggtgcatagagtgagtaaaggtgaaaggagacag
gaccaaggccaggagtttgggctatttctaggaatgatgagagttgttagggaatttgaa
agcaggcaggagccttctggcaaaggcatttcttagacagggtttaggacatgctcatcc
agtgttttgaatattttatgtaattaatttaatccctgataatcctacctagaattcagt
cttcgtctctcgcatttatagatgaggtaaccaaggcactgggagttttcttaatgacta
ttctgagaccacagaagggagctctgggatctacagaggaggtctggctcactgttgttt
ccttctgccccctaccccctgatgtgtgtacaaagatagcccaggtaagacttgaggaac
acagcaccagtcaggagtctgtgacagtgggttctgtcctggaaataggtagaagatggg
cacaggctgcggtgccgaggtgcagtttgattatgtggtgggcaaggaacacgaaagaag
aatagaaggcaagtcaggttcttgtcatgaacaaatatctaaaatgaacataaatataat
acagtggatcatacatgtttttcattcaagagtgatataggattgtagagaaattgttca
gttatcagacatcctttagtgacctggaggaaaaactaaactaacttttctgaaggaata
tggatgcctagccaggagtctgtttgatgataattgttgtgttgttagggaatttgagag
caagcaggaaccttctagaaaggcttctttcccctcccacccagaaatccttccttctcc
aagactagaatggcctgaacccttgctgtggtctgggtggggtaagatagagtaatgaca
aggtgcctcaggcctcttcaccaccccctccccaaacagcagcctgtacagaaagctaat
tagcatttagcctgttgccgcctgttctgatgctgcttgccagcacacacttagaggcag
ttctatagactggcaccgtaaatacggaggtgttcacaccgtacaagatagaaatgctga
tgttcagcagggatttggttagaccgtttcccaaagcattaatccctatacagagagcat
agtcttttcattacactggagcttcaatccaccactgaaagaaagttggttcctagtgct
agaggtaggggaggaagtatggcctcctttggagaaactccttgtgaagaattatggtaa
ggaacatgtctttacaaagcccgctgttattattttaacccaaggattatgtagcagaaa
attggggactatttgaatagttttaggtggaaaaagaagaaaagaaaattaatgtctagt
taagtttgatttccccaccttttttttttcccttaaggctgactgtccaacttgctaatc
attagccagattttgctacatattatggtcaaatttaaataaattaagagtgcatcagtg
aaatactagtcatattagctggttcagaagaactcacttcctctctatgtggcttctgag
tggagtcagttgtaggttgtgttcagagcgtataatctgagatgtctgaaatcttgaaag
tgtgtgcctcagtgacctagggttgaaagggtttgtgcagaaaggtttgccgatggatct
gaacacgagaacatgttacttcatctgtaaagctaattctgtaacctgtaggctggaacc
tggcccaatccagaggtaaaataacaattcctggaacgctgtgtacgcggtcatttttct
agctggttagtgcttgtttttgttgattaagatgtgtggtactgttttctaagcactttt
acatgagcctttctctgctgcagattggtacagtcatctcggaggaatgcagtgtggggt
gacggaatggttttattatacttaaaaatcctggtgaaagatatctacagtgtcgtgctg
ggagagccgtatgagctggtgcttggaaagtttgcttagacttggagtttagaTCCTGTT
CCCGTTAAGATCTGT
Primer
(+)ttatgccccttctgagtgtttt
(+)ACAGATCTTAACGGGAACAGGA


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