Mouse element [ mm1905 ]Position: chr13:15,588,428-15,593,153 (UCSC browser) Source: Lawrence Berkeley National Laboratory Flanking genes: Gli3(intragenic) Timepoints: e11.5 This sequence did not show observable enhancer activities at E11.5 We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution. Fasta sequence AACAAAGGCAAGGATAACTCCAgggattatcttcacagggtatgagatagagaggccaga gtttgatgttgaaaaagaagaagatgcagaggcaactacatagcagctggccttggtgga gttccagttcaaggccgcaaatacacagcaaactgtaaccattgtagacactacccatgt gataggggccctccacatatttcattaccagcaatattatcagaattgtgagaatgggag aactagggaatggggtgtacctctgaagggcaggcccagcaataccaatgcttttacagg tgaggatggcatcttaatagatgcggagaccttatggatattatcccatagatggtgaag tgatagagattgcaggcaaccagggtagcaaggtagattaacaaggtgggacatatcggg ggattatagaccatgattttgtataggccttcttttccaaagactgcctaaagaggacga caatgaagaggttaaggataatcaagatgaaaactggaaggtataggtaatttttctgac ctcctagacacagttctttaaaagcaataaattagatatacatatgtgtctctttatgta gtcatatgcatgtgagtacacagtgtctgtaaggccagaagaggatatagtcctctggag ttataggcagttgtgagcccccctgatatgagccctagaaacttaactttggtcctctgt aagggcactcctagcgtttaaccaccgagccatctctttagtctttcatgctagttcttt atccccaggcttctgtttgtcagagtttgaggaacaggaccctgaggtctctttactttg ttgcgtggttggctttgggtattcactggggaactacacagtaatcaatatggtatagtg tgcatatagcacattagtccactgcagtctacatcagttcaccaatgtacagagtagcct gtatgtggtagttgattgatagatgctcatgaaacactggctctgggcatccttccatgt cttctgccaggtcatatttctggcactttattcaaaatgacttgacaggtcatgtaaaag ctgtaggtttttgtacatatttttattagtattttcttccttgtctcagatcagtatcag aaaatagttgccgtggctcctgcacccagtctattgtttggttccaaggctaaggaaaga gtgcacacaaacatgtgcaccacagttgttagccacttgtctacttgtatgtggcaccca tgccacataaaacaagctcagctataaacaaaggaactcagacttctcactctcaacacc aaaatgaatatttgaaatggattcctcacctggtagatttggtgctgaaacttgttggtg aggcagttgcacggaaggggagatgggacatggccttattcatgacacactcagcaacta tacatgtaagtcattcagacttctgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgt gtgtgtgtgtgtgtgagtgagtgagagagagagagagagggagagagagagagagagaga gagagagagcgagccagccttgctatgtagtctggctggcctggagctccttatgtagac caggtagatcctgccttctcaatgctgggattaaaggcttgaaccaccatgcctggcata atgggcttttaatgcactttctgtagagtcattagaaacattatcttgcccagtgctcct tatttattttgcatactatgcctgtctatcaacaatggaaaatgttcatctgttctcaag cagactgcaggcctgaagatcgttttcagaaatgttagaaatgttagtaaccaagctctg tggtgagtagctgaaaccacatctaacatttggaccaagcctgctctgctttcagagccc tgctgcccttcatatgtgtagctggcgctgtctgtcctgtcccagcgtcctcgtctgttc ttcctgactgtgtggttattgagcagctgctttgtggatgccatttgttatctatcagca ttgcaagttcaggaatgaagatgcttggtcattctagctggcaggaagatagccctagtc tcttcttcagttaaaaaacaaaaaccaacaaaacaaaacaaaacaaaaaataaaaatccg gaaaggaaaactttcagagagaggtttgagaatttttctttgctgtgtattttttgacat aattgcttttgtttcattccatttttcctaattgcagccatttagtatttttttccttca ggagaattaatgtgtgtgtgtatatatctgtctgtctgtctttgtatcaaggtgatgtca gagttttataacagaaatgaactgatgtttaagattttaagtttttaattcttttaattt taaaaattatttttaggattttcaatagatttagaaatcaataactcccctttacagttt tgaggtctttaaaaaggccttgagaattttcctaggtgcccttgaatcccaggttttgtc agagcttgagcttgctagatatcttcagagaataaacaaaaacaagacttgtgtagtgtg tgagagcagtgatgcagcctcttcccgccaggagcacagcacttgcttgtgaaacagctc tgggatgctcctcaggcagtgaggttgagctggagaacagcacatttcctgagcttcctc ctggttctaggttgtccagcctcagcctctgtatgcctcccgaagctctcctccatagca cacagcatttcccactgcccgaagctcctccatagcacacagcacttcccacttgttcgt tctttctttctttctttctttctttctttctttctttctttctttctctctctctctctc tctctctctctctctctctctctctctctctttctctctccctccctccctccctccttt ctttctttctttctttctttctttctttctttctttctttctttctttcttttttttttt ttgctagaaatgattactctgaagctcttctagtacttttaaaatttcaatgaaataaac ttacatcatttcttctctcccttttctttcccatatttcctataggccccatctctcaaa ttcatggcccccttctaaaaacattattgttacatatatatttatatgctatatacaaat caacacatagatgcagcctcctgggtcagacagacatgcttgtacatgtttttagggctg actattggtgtcagatgaccatctgtgggctcatccctggattctccctctcttaatagc ctttcatttcatgcagctctttacctagggctggggcctgtgaaattcccccatacatgt tgccatgtcacctggtgctgtcactgttcaggtcttgttaacaagcagctacattgttga gatttcgcgtcatattcagaagacacagtctttcttgcagcagacttcctggtccttaag tgtttgcctattcactgtcttctctcaggatataaaagccaaacatcctcttttcaccac cagtttggattttagggcataaaatagatgctctgtcagtggagggttcagtacagactt gttgaataaatgcatagtctgaaaatgactgtagacgtgcttgtaggagtttaggagagt cttcattccctccagagaataaatgctttagcttagcgttaaggtggctccccctcattc acagagtagatgaatgtagcttttggaaagctacactgctatttgccaaactcatcctct ctgctccctgcctcctgtctgtctttactgtcagtggttggcttccttatgtatcattgc agccttctataatatggctgaactcttggggattcttacaggttctataacacttgactg agtttgtgtcagtgttgagtatgtgactgctgcttactttcgtggctaggagagcagaaa ttgagatggcctctgattaaatgagtggagaactattcctcttgacaaccagaacattgc aaagtggcgaactgtaagtgtggtcaaagccccatcgtgttttgtaagggccctgagccc tagaagcaggacataggctgtgccacagagtgactgaatactcagtgtgcatggatccaa ggttgtccactgttcagctttctctattctgtaatgaataggaagctttaacctggactt ttaagtttgaatgttaagaaaaaggccttcactttctcattgctgggttctctagaaagg gattcttgttttaggacttaatctttgtgagggaccttctgtattcagctgcactttgct gtctactcagtggcaactgttggttggtgttggtaacttcataaggcctaaaagtagaat ttagtagtttctaatttagtagccatagttattgctagctcatgacagatgtcaaatact ttattttctggggttccagaaacaatcaactataccttatggcatgcagagagacatgta gtagagagctgtagtgggtagaggtgcactttacagtaagctaggattgagttcatgtta ggcctttaataggggaaaggaactttatggatctcagttttcttatttgtgaagtagaga taatgctttgtgaaaggtcactgtcagaagcagacgctgtgataggcataatttgtatgc gtaattgtctgtaatacattttttTCTATTGGAACATGTGGCAGTCPrimer
|
For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.