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Mouse element [ mm1905 ]


Position: chr13:15,588,428-15,593,153 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AACAAAGGCAAGGATAACTCCAgggattatcttcacagggtatgagatagagaggccaga
gtttgatgttgaaaaagaagaagatgcagaggcaactacatagcagctggccttggtgga
gttccagttcaaggccgcaaatacacagcaaactgtaaccattgtagacactacccatgt
gataggggccctccacatatttcattaccagcaatattatcagaattgtgagaatgggag
aactagggaatggggtgtacctctgaagggcaggcccagcaataccaatgcttttacagg
tgaggatggcatcttaatagatgcggagaccttatggatattatcccatagatggtgaag
tgatagagattgcaggcaaccagggtagcaaggtagattaacaaggtgggacatatcggg
ggattatagaccatgattttgtataggccttcttttccaaagactgcctaaagaggacga
caatgaagaggttaaggataatcaagatgaaaactggaaggtataggtaatttttctgac
ctcctagacacagttctttaaaagcaataaattagatatacatatgtgtctctttatgta
gtcatatgcatgtgagtacacagtgtctgtaaggccagaagaggatatagtcctctggag
ttataggcagttgtgagcccccctgatatgagccctagaaacttaactttggtcctctgt
aagggcactcctagcgtttaaccaccgagccatctctttagtctttcatgctagttcttt
atccccaggcttctgtttgtcagagtttgaggaacaggaccctgaggtctctttactttg
ttgcgtggttggctttgggtattcactggggaactacacagtaatcaatatggtatagtg
tgcatatagcacattagtccactgcagtctacatcagttcaccaatgtacagagtagcct
gtatgtggtagttgattgatagatgctcatgaaacactggctctgggcatccttccatgt
cttctgccaggtcatatttctggcactttattcaaaatgacttgacaggtcatgtaaaag
ctgtaggtttttgtacatatttttattagtattttcttccttgtctcagatcagtatcag
aaaatagttgccgtggctcctgcacccagtctattgtttggttccaaggctaaggaaaga
gtgcacacaaacatgtgcaccacagttgttagccacttgtctacttgtatgtggcaccca
tgccacataaaacaagctcagctataaacaaaggaactcagacttctcactctcaacacc
aaaatgaatatttgaaatggattcctcacctggtagatttggtgctgaaacttgttggtg
aggcagttgcacggaaggggagatgggacatggccttattcatgacacactcagcaacta
tacatgtaagtcattcagacttctgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgagtgagtgagagagagagagagagggagagagagagagagagaga
gagagagagcgagccagccttgctatgtagtctggctggcctggagctccttatgtagac
caggtagatcctgccttctcaatgctgggattaaaggcttgaaccaccatgcctggcata
atgggcttttaatgcactttctgtagagtcattagaaacattatcttgcccagtgctcct
tatttattttgcatactatgcctgtctatcaacaatggaaaatgttcatctgttctcaag
cagactgcaggcctgaagatcgttttcagaaatgttagaaatgttagtaaccaagctctg
tggtgagtagctgaaaccacatctaacatttggaccaagcctgctctgctttcagagccc
tgctgcccttcatatgtgtagctggcgctgtctgtcctgtcccagcgtcctcgtctgttc
ttcctgactgtgtggttattgagcagctgctttgtggatgccatttgttatctatcagca
ttgcaagttcaggaatgaagatgcttggtcattctagctggcaggaagatagccctagtc
tcttcttcagttaaaaaacaaaaaccaacaaaacaaaacaaaacaaaaaataaaaatccg
gaaaggaaaactttcagagagaggtttgagaatttttctttgctgtgtattttttgacat
aattgcttttgtttcattccatttttcctaattgcagccatttagtatttttttccttca
ggagaattaatgtgtgtgtgtatatatctgtctgtctgtctttgtatcaaggtgatgtca
gagttttataacagaaatgaactgatgtttaagattttaagtttttaattcttttaattt
taaaaattatttttaggattttcaatagatttagaaatcaataactcccctttacagttt
tgaggtctttaaaaaggccttgagaattttcctaggtgcccttgaatcccaggttttgtc
agagcttgagcttgctagatatcttcagagaataaacaaaaacaagacttgtgtagtgtg
tgagagcagtgatgcagcctcttcccgccaggagcacagcacttgcttgtgaaacagctc
tgggatgctcctcaggcagtgaggttgagctggagaacagcacatttcctgagcttcctc
ctggttctaggttgtccagcctcagcctctgtatgcctcccgaagctctcctccatagca
cacagcatttcccactgcccgaagctcctccatagcacacagcacttcccacttgttcgt
tctttctttctttctttctttctttctttctttctttctttctttctctctctctctctc
tctctctctctctctctctctctctctctctttctctctccctccctccctccctccttt
ctttctttctttctttctttctttctttctttctttctttctttctttcttttttttttt
ttgctagaaatgattactctgaagctcttctagtacttttaaaatttcaatgaaataaac
ttacatcatttcttctctcccttttctttcccatatttcctataggccccatctctcaaa
ttcatggcccccttctaaaaacattattgttacatatatatttatatgctatatacaaat
caacacatagatgcagcctcctgggtcagacagacatgcttgtacatgtttttagggctg
actattggtgtcagatgaccatctgtgggctcatccctggattctccctctcttaatagc
ctttcatttcatgcagctctttacctagggctggggcctgtgaaattcccccatacatgt
tgccatgtcacctggtgctgtcactgttcaggtcttgttaacaagcagctacattgttga
gatttcgcgtcatattcagaagacacagtctttcttgcagcagacttcctggtccttaag
tgtttgcctattcactgtcttctctcaggatataaaagccaaacatcctcttttcaccac
cagtttggattttagggcataaaatagatgctctgtcagtggagggttcagtacagactt
gttgaataaatgcatagtctgaaaatgactgtagacgtgcttgtaggagtttaggagagt
cttcattccctccagagaataaatgctttagcttagcgttaaggtggctccccctcattc
acagagtagatgaatgtagcttttggaaagctacactgctatttgccaaactcatcctct
ctgctccctgcctcctgtctgtctttactgtcagtggttggcttccttatgtatcattgc
agccttctataatatggctgaactcttggggattcttacaggttctataacacttgactg
agtttgtgtcagtgttgagtatgtgactgctgcttactttcgtggctaggagagcagaaa
ttgagatggcctctgattaaatgagtggagaactattcctcttgacaaccagaacattgc
aaagtggcgaactgtaagtgtggtcaaagccccatcgtgttttgtaagggccctgagccc
tagaagcaggacataggctgtgccacagagtgactgaatactcagtgtgcatggatccaa
ggttgtccactgttcagctttctctattctgtaatgaataggaagctttaacctggactt
ttaagtttgaatgttaagaaaaaggccttcactttctcattgctgggttctctagaaagg
gattcttgttttaggacttaatctttgtgagggaccttctgtattcagctgcactttgct
gtctactcagtggcaactgttggttggtgttggtaacttcataaggcctaaaagtagaat
ttagtagtttctaatttagtagccatagttattgctagctcatgacagatgtcaaatact
ttattttctggggttccagaaacaatcaactataccttatggcatgcagagagacatgta
gtagagagctgtagtgggtagaggtgcactttacagtaagctaggattgagttcatgtta
ggcctttaataggggaaaggaactttatggatctcagttttcttatttgtgaagtagaga
taatgctttgtgaaaggtcactgtcagaagcagacgctgtgataggcataatttgtatgc
gtaattgtctgtaatacattttttTCTATTGGAACATGTGGCAGTC
Primer
(+)AACAAAGGCAAGGATAACTCCA
(+)gactgccacatgttccaataga


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