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Mouse element [ mm1904 ]


Position: chr13:15,584,452-15,588,689 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGCTGTGTACGGGAACATTTTTagacattccaacatcagtgaaatatcttttaatgagat
atgactgtttaaaacctcaactgttcattaagctattaattgaagtatggtttcccaaaa
tgagtacacagtgaagaccacgcccaggacaaacgagaaaccctggcctttcattcatgc
ggacactggtggccattgggaagcttccctgtggttgcttgctggaaacaccagctttca
ggcgcctggctttcagtagacctgacacatcttctctgggtgtggactgaagaatgtgta
catcctcaggtatgcatatttagcttactgtatgctacggagcagtgttcttgagtgggt
ctgcatccttgctgttcattcccgccaacatgatctattttaattctagccctactgttg
tccatacagcgctctccagttgtggttttaatttgtccctgatgagttaaggacttagtc
accttttaaaaccctgagtggctgtgtatatgttctttttgtgaaatggctgttaaaatc
tgcataggtaggtggatgataggtagacagatagatgatagatagatcatagctccttgg
gataatattaaccaggcattctatccctggtaaaataaatatgacatttatctgattctg
cctttatatatcattttactgctttttctgaattactttatcctgttgatcagtctgttt
gatattttgtcagtactatgctctctcacgtattgtatagggagtacattttgtttgagg
gtgtgcatttatcttctgttattttccccgttcagatagttcatggctataacttagtgg
aactttagaaacattgttttagaatcatgttgatgaaccaatacatatggtaaaagtata
tggatagtgtgatcaatatcagcaatcgtttctgtgtctgtgaagagtaaaaggaagtaa
ggtaaagagggctgaactacgtatcatttatttcttgaaagaatagtgttttaaacaaat
ctgactcagtgtcatcatgtattacgtctaggggtgtgtgcctggatgcttatgatgctt
tctgaagcagtcacaaatccacggtatctctgagattttgttgggttgatagtaagcagc
tgtaggcattattacagttaaggtgagtgcaagaactctctattttctgccatgtgtgca
tgcaggtgctttctttctaggcagatatcaaaaccacacaaatgcctactggctttggtg
ccaaccttctgccttcatcttcataagaccatatttatttatttttaagcgtaacttata
agaaagtgcataagaaataatgctggcaagaccttccaggtgtacattgtattttcatct
gttatattttaacacattctggtttacacttgttgcatctgccttggattgaaaattgca
ggtaccttgataagcactttggctgaagtgaatggcttatattatttcaggaaaatgcaa
ccccaccccagcccctctgtatcatgctgcattttatcagctcatagcagctaccctgtt
atccactggctttttcttctaaggtttctcaggcatggggaatagtttgaggctttatca
gtgttggagttacattggcagcaacaagaacggccaaaggactgttggaactgaacttcc
tcttgctttggggtgaccttagtgggctaatgacttgggatgctggtcttaagactgtac
aggtcatgaccaaattgaaagaagcttatgtgaaggatgaggcctgagtatgtgatgttt
tgctgtgattataactttatgaagaggtggatcccatgtgtctttgagactgccaaatag
tatgctatccaaccctttgaaggtagggaatgttgccatccaaggtgtaattgaactact
ttcctaagtcccagccttatcccttgaaagctggctcacggtctgctctaagcttttgaa
aataattcagagacatgagtcctatttattccagatcatctagtgtagggaagacttgcc
agcccacagagaaccttgaacttccttctttccccgtaggagtgtctctgggaaatcaca
catacaatagaacttttcatgtctagaccctgcccaggggatttctgtctaataagaaag
tttttttctctctctctcttttttttttcttctttagcatactcagaacagaacaaagga
agaggttgtggacagagtgcgggaaagaaaatgtagcaaacactgggtcatgtatcttac
taacagcttcattctgacatataggcaatcttgtaagcacagggctcagttttgctgatg
tgctaccatagctaacaaactctataaggccgtgctaaatgttacacacatacttgactt
ggatgagttaatagccagatcacaggatactcacttaagaagtataaataatgtctctag
aggaccaaggaaagcctctatgcaaggaaaggcactatataagttagcagctttgcatgt
cagcagtgaaggcagggctgagaggagtggggactgggaactggagagagaataagatga
agaagaaagacatccaaaatagaagcagccatgtaagcaaagacctggaagtatggatgg
cattggtcatttacagaaagatgaatgcattagggctatgacctagtaggtaagagctgt
ggagaggtgaaggtggtggttggaaacataacaagttgtggggtcccatcaaacagtaca
aagactgttggcgccatccttaggggagtcggaagggtcagtgatgagatctcaattgct
ttagagtcactcaatcccagtggatagtggaggtaacatgcatttaggggtttgcatagg
attcactcggagagtggaagaagacaaaaagagacaatatcaaatcagtataaagaaaga
cttccatatctcatattcattatagtattatctttttagccaagaaatgggccagcttac
gtatcttagtctgatgactaagtttagctgatgactgagttttgcagactttgagttcta
tgtcttactatttctaatattaaatagtatgtggcactctcacatagagagatttttttt
tttaaaccaaagtatattttcttttcagtggtcaggaataccaatacacacatgattgtc
agagaattctttttagaaccagtcttctaaagattgaaagctttcatgggttctggagtc
tgccctttttttgtgtgtgaatccactgatgagagtcctgaaaagtgttctgcctttact
cagaggaagacgtgctcagtgaactccaccacgctgtttccaggcagtactagtcagagc
attcttcctgtgtggggcgaagtacaccttcccagaacttcagtaccatctgtttctctt
tgtcctgcttcctataaaagcactttaacataggagtttgattggttgcaggagcagaaa
gtgggctctagagagtcctgataactcccaacccccactgtgcccacagcttggcttagt
ttagcatcacatttccggaggagttatagctactgcaccccactttaatcatcatccctg
caagcataactgtaggcttgtcatcatcatgaaggccaagcaagacacagcaggtcccta
gtcaacatcatggcggctgaaagccaaccagtcccattcactgccacctagactgagacc
tagctggtcctagccactatcactagggctgaactaagtagcaggttggtcactgtccct
gtagctataagcaggttatgagactgagttatggggcctctggcttcagtcctatttcac
cataataggcctcatatttttggtgcctaaagcagggataagagagtaattgcagtgaat
gttttgagaataggaaatgtttcaatgtaagaaattgttatggttacattgacaggatgt
atttgtatactagcctaacaaaggcaaggataactccagggattatcttcacagggtatg
agatagagaggccagagtttgatgttgaaaaagaagaagatgcagaggcaactacatagc
agctggccttggtggagttccagttcaaggccgcaaatacacagcaaactgtaaccattg
tagacactacccatgtgataggggccctccacatatttcattaccagcaatattatcaga
attgtgagaatgggagAACTAGGGAATGGGGTGTACCT
Primer
(+)agctgtgtacgggaacattttt
(+)AGGTACACCCCATTCCCTAGTT


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