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Mouse element [ mm1903 ]


Position: chr13:15,579,556-15,584,732 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGAGACTTCGGCATTTTCTGAGaatttcaaattcacttgtgtctacaactaggcttactt
gggattattagcatttaaccagcaaaattgttaaagtggaccacgctgctacacctgtgg
ccctgccagtgtgcttaagcctatggaaacgatgaccacattttataagcatcatttttt
aaattataccgttaataaatagtatgtctgtgaattggtgcaaggaacttggaattctgt
gtgcaattggaagccatttgggaatgaagaccttgtctctaaaccagtttagttgtatat
agataggtgcacgttaagatttaaatgttttattgattttgaaatttaagtatttcatat
gcagaatttaaagtcctctgagttatttttgtgggaactgcctaacatttcccctttgcc
ttttgagaggttagcttctttctttgtgtgactatatctttacaagtaaaactagacgca
tttgatgctgagaggagccctgtacagtgtgggagggagcatggggtgagagagaggtct
cagtggaactgctcacaactgcactgtagtcactggcttagctctacctacagcagagac
tgaaagggtaggggaaggggctattttggaaagcactgagccctaagaaagaagagggaa
atgagaatggagaatgttcactattatttctgctgccttccatggttggttgtaggttgt
caaggatttttggtacatgcttgcttataacaaagtttttttttttgtttgtttggtttt
tttgttttgttttgttttgttttgttttaaatcagaaaacttttagttctgaaccgggtt
gaaaagtgtgttttgtgtgtgaggagaacagagagtgaaaatgagcatgggagagaaaat
gatgtgccccttagatctgaacctgctatgcttccgtgagcctccttttggtggcatagc
ttttactcaaccagcggtgataaaatcctgggtttagatctttgcctatacatcaaaaga
acattttaggaatagaacagtggcataaagtagtgggactttcaacaatgtaaaatactt
cctggtaaaataggtctgtactcttcagttaaagatgtcttccaagcatccaggaaccag
aagatagatcgtggcccatttcatattaagtttaaagccaaatctcactaaaaatcaaaa
acaaaaaccaaataatcccaaactaatatgcctaggattgttttcaaatcctggcacatt
ttagaacagtagaaaattggtttcctggggctgcagcaatggctcagcattaagagcact
cactgctcttgtagaggactcgttaggttcctgaggtacacatgtggtggctcacagata
tctgtaattccattccaggagacctggtaccctattctgactttcatgggcatgcatgtg
gtatacatgcatacatgcaggcaaaacactcatacacagaaagcaaaataaatgaataaa
taaataaataaataaataaattctttcctataaactttgacagcagttcctgtataggct
aatggtgttttataaatagagtttacttagcaaaaaccatatgcatgcccagtgaaataa
tcttatatttatttatgttttgatttatagaaaacatatgtccttgacaaagccttgggc
ttttttccacaattaaaaggaatcaagcttaaaaaaaaatagctaccatcttaataggaa
actttttcacataaatttaaagcattttctttgatgtattttacacaaagtcagaatgtc
cattagtttgacccataaagtagatgggaggaattcaaagtgaaaaagatgtgtataaat
ttatataaatgtatctgcctgtctatccatccatgatcactctttctcttgtctgtctcc
attcatatacacatcaacatagttactggttgaatattggacaaatgcagtgttaaagag
gctgtgcactctgggtcaggagatgtgcagtggtatagcagagaaattactaagagcatc
tattgcttgttctcattgggactccttggtttagcaggaaatggtacttctgtgcttttt
aagatttatttttattgttttaaaattatatgtatgtttgtgcctcttatataggtatgt
gtatgtgtgtgcctgtgtataggtatatgtatgtgtgtgcctgtgtgtaggtatatgtat
gtgtgtgctggtgtgcaggtatgcgtaagtgtgtgcctgtgggtatgtctgtatgtatat
atgtgtccctgtgtctaggtgtgtgtatgtgtgtgtctgtgtgtaggtatgtgtatgtct
ttgtgtagctatctatgtatatgtggatgcagtggtcatggagaccagaaagggtaccag
attccctggagctggagatacagcttagccacttgacaggggtactgagaagtgaatttg
agtcctttagaagaacaatgcaaatgcttaacctctgagcatttctccagctcattttcc
ttcttcttatttttttaatgattggactgggggcagggataaaataattattaaatatgg
aaacatcagaaaggaatgcttgggtatattagtgatacaagtaccaattatacatacaat
tatatgttagtatggttttgtattttatattaacttggaggattttcattttagatgtga
gagattatatgttcttatagagccaaaaagaatggttaaccttttacagaaattctgttt
catgcactctcaggcttctgtgtcttggaaagctctactcctttagtcatgaacaaatac
tactgatgtggtaagtatgtctgagaagtgagccattttacagcacaaggattacatgaa
ccatcctggaagtttacagacaggcctcaaatattggggatcctttggaaccccaccccc
cgttcctttaacctcctgggaccttgaggagttttatgacatattatttactgaaggcac
tgggtattgctagattttctccaggagaatactgagtgatcagaaatgctctttgaacac
ccgtgggaaggcagcctccagattttagggacatgaggatgaatcttacttctatgcagc
gttacagtagtgtaaccccgctaactctgtaggggatgcattattaaaaatttaagagat
tcatacttggacatcacttatctctaaaaatgaaggacctggtcacatagatgaaaagaa
ctctttgcctccaaccttctgtttcagtgacattcactttaattctaaaggaatttagaa
gactatagaatagcaggaatgatgtcagctatgtaagagctggttgagaagaataaatta
ataaaatttcagtttaaaaaggtattttagaattctctttaacttcaacagtgtaaactc
catgagtaggtccatctcaggttgaaaatcacttagggttttatttaggacaaagcagac
catcacactgttaaatcaaacaatttggatgttttgaaagataacttccagatgtcagtt
ttaggaaccagtgcagagagatttccccagttctgcctgctgtgtagatgattacaggag
tgtggttgcttatgcctgggagttgtgtgtgtctctgtagccctgtttccatctcttact
gacctggcattttgacctgaccttatcttcctggtgtctgcttgtgggcctagaagggtt
ggtaactgtgtacgactgagactttcagccctggtttctattctagagcctgtgaatatc
ttcatagaggattttgatttggcatctggtcttttgcagttacacttcattatatctttt
cttacagcctttgcagacttttgtgttactgatttttagattttttaaaaaccttttgca
atgagaaaaggaaacaaaaccaaaactgcagtaaagtttgattactagacccctaaactg
tggccctctgaagtaacgtttgtttcagtttaatcccttagcaggaattcataggcaaag
actggataacattgtagctgaacagttaggcaccagtggttgtacagcaggggagagacc
ccacagtcactcctcacaggaacaccagcagcactggtcatcatgggggcagctggcgtg
gtaattcattttagaaagcttttctgtgagaaatggaacctacagagatctgagaaggac
actacgcctctcttcatcctggcagccaggcacctgatcattgtagaatgatgtattgtt
catattgttcctttaacacaaacttggtttattacatccaatgagttctgtttgggaaat
ttagaaaattcttaaagagaatcatgaacgtggcctggatcctcaccatttgaacataat
gtttgttcctccttttttttattcagtgtctttttcctatttactttttttttttagttt
ttttttattagatattttcttcatttatatttcaaatgctatcccgaaagtcccctatac
cctccccctgccctgctcccctacccacccactcccacttcttggccctggcgttcccct
gtactgaggcatataaagtttgcaagaccaaggggcctcttttcccagtgatggctgact
aggtcatcttctgatacatatgcagctagagacacgagctctgggggggtactggttagt
tcacatgcaggaaccatttttccatatcattaaacgtcctccagtttgctcataaagact
gtgagagtcccctgtctttggttatatgctttttttccctcttttttcccttcagtaaat
aatgatggggagaaaaatcattctcaacaaatctcttgctctgagtacacttgactgaat
tagcttcaagaaatgtatccatgtacatttccattcagctgtgtacgggaacatttttag
acattccaacatcagtgaaatatcttttaatgagatatgactgtttaaaacctcaactgt
tcattaagctattaattgaagtatggtttcccaaaatgagtacacagtgaagaccacgcc
caggacaaacgagaaaccctggcctttcattcatgcggacactggtggccattgggaagc
ttccctgtggttgcttgctggaaacaccagctttcaggcgcctggctttcagtagACCTG
ACACATCTTCTCTGGGT
Primer
(+)AGAGACTTCGGCATTTTCTGAG
(+)acccagagaagatgtgtcaggt


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