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Mouse element [ mm1902 ]


Position: chr13:15,575,056-15,579,833 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

Expression Pattern
branchial arch (3 out of 8 embryos) 
forebrain (8 out of 8 embryos) 
hindbrain (rhombencephalon) (8 out of 8 embryos) 
midbrain (mesencephalon) (8 out of 8 embryos) 

Embryo 1

Embryo 2

Embryo 3

Embryo 4

Embryo 5

Fasta sequence
TACACTACGTCCCTTCCATCCTtactgtcccatgccatgacggttcagagtggccttctg
tccactcccttggacttctcatgctctgcatgctcctgttggatgagcagtgttgtgatt
cttgctgtgaagtccctgttctgtaatcgtcagtgactcatagggtgaagtgactacagg
atgaagctcagggccattgacttaatgtgtagctatcttctaaaatctgacagcagcctg
actctgatctgctcattgattaagtgcaagggcttcttgctttgttcatgtagttctcca
cagaccacgagttctgctgatatcaccaggtgttggctgtcagtgtgcaagtgtgtgttc
tcagtttcaccatgcatttttttatcctcttggaaactgcataataactttaatatttta
atttcttcactaattatatcttaattaataaactttgtatgttagaatggttttaggctc
attgaaaccttgagcagaaggctccttcccttcctctccttactaatattttgcattatg
tgttgtcagaaataatgaattaactaaaatctgtagtttgcattggggttcccaagatca
tgagcgtgggaggggatcacaagtgactgagaggtttcaatcctgagtgcttgcaggaaa
gataatatacttagccataaaaaggaggttttgataaatgcatacaatgtatccaccatt
gcagtacctgtagaatagtatcactatcctaaaactcccatgttctatgtgtgtatcctt
cctccatctctttaacacttttaagttttcattcaactttggtaaaatagtgcctcattt
atctgccttaccctcctccatagcttgcctcagtgcagtgttgatggccaagacaacctt
atcatatggagattagactaggaagtcatttcctaggccttccagacgtgcagagaagag
acagggggcatgtacgtgaggacacttaatagtgataattaccttaaagccaaagtttaa
actttagccttgctggaaaaatgtcatgtgatcttgggctagggctacataccttctgac
tgccactgtgggtacgtaaatatttcactggtagtgattcactaggtttaatttggcagg
atttaattcactgataaattttatctccatcctttcaatgtagtaatgaagtaatgtagt
gtcatttgttagtaatctagcaatggatagattttaatctgattttgagaatcagccagt
actttctgcattcattccagatatgtggccacaaggtctaaactagcaggccagtggata
gtggcaaccaaggtcagagaatgcctttttaagttgctgttactgatgctgctcaatagt
tagtgaatgaaatgctcattcgtaaatcctcagtgagaatctcagatagaatctaatttt
gtactgagatcgtacagtaagaacaagtgctcccaatattgaatctcagtcgtaaatttc
ttctaaaaaaagaaaagaaaagcaacatgtagacaatcggattgattgagagcagataac
accaccatcttgcctagttctggcacccttgtagaataaagagcatgacttgtgtctgct
ctcggaaagtccctgggtcgcctgtgactgctgtgatcaagtggtgtgagcatttcataa
tccagaaacacactggtcagaatcagaaacagccaccaaacagtggaagctcaagggggc
aggaggccacttgtgggagacgtccctctgggaggtggctagtgacctcctacctcccag
tagtctgaccctgcacccaggcaggggtggttccatttcctagaagctcgcaggaggcag
gctggtgctacacaaccacagtatgtacccagatgcacttccaacacacctgcttctgct
tacccgtcttccctctattcttatgtggtaaaaataactcctcgtggtgatcatttctgt
gactttggacagatgcaggtagtttaaccatgaccatggtcaaggcagagtagtgtcccc
tcttttaaatttgaacacatatttggactttaaagttagcttcctagttaatgcattggt
ggagtcactggcagtgctaggaagggtagaaactgttcttggagattatcttttacattt
ttttatagagcctgtcttctaggcctgtgtgtaaagtttattcttcctattttttttttt
tttttttacatttagttcttacagacctaagaagttattgaaaactgttacaaaacacac
tacctaggttctgtgagcttgattcttttttttttttttttttgagaatacagacaaggt
gtattttggactaatttaaaattgcattttatgttgaaaactactggtagccatattgat
aaggactttttgtagttgtttttgatactgtgagttatttgcacgagaaaattagaatct
taatatttagcacagctacaacccagaggaataaaatagagaagtctttgctaagtcaga
agactaatctgtcccccctccttcttcctgcccccaccactcctttatttctggaagctt
cttctttttttcctttgcttttatagataggacttcatctcaggtaggtagattttgata
taaagttatcccttagcctgcaattttttccctctcctgcatcccccctgtctttggctt
tttcctcttcttggtttctctcttctttcttctttttccccttcagctgtagaaagttga
gttccatcctaattatgaaatcttcggagaccattcccacatggttctgtaaatggtagc
tccatccctgttcttttcatctctctcagctctccagcttgacagctgaaaaggtctgac
tgtgccacacaatggtttgattggtttctctgggggagactttcccctgcctcatcatcc
gccaggcaggtggaccagaaagtctcttgattcttttgttgcctctcaaagtccgaggtc
tttgactgaataaatccgccgtcatgggataatttgctaaaaggagactgtgagatgcca
gagaaaagcctcctgacttgggtgctgcattaatgaaataacggagccttggagtttgca
attgaaaaatcactaggaatgcaatgggtggagatgggcctcttttatttcccataataa
actttgaattctaccaatgaaagcatgcctattgtttcgcaggcctgcgggcctaagtgt
gtgtgcatttgtacccatgtttaagagggcagccctgcccgactttgtcggggtgctgtg
tctacttagtcactagattattactagtggatagaaagaattccatgtgacagagctaag
gctgagttaacacaggacgaaaagtaatttacagataggctgtccccagccatctttgta
gctcctgataaggtttcatttcagaatggataggcgacatttccacttacgggcccattc
tgcgacatctgtgataacagcttctggatcctaattgaaattggtttcaaaatggatttt
cacttttctctgtcgttggaaaatattgaatggactcagagctgccacagagaaccctag
accttggaaaatggagcaggaagctaggctcatctttcataacagtggtgatgatatgac
agttttgttatcggtcttattaatgaaatcattgatcactgatgagggagttaataaact
acatcccactagcatctctgaagctcaattagactgcattacaaacaagggtgggagagg
aacaaacatcagtgggctccacggacgaaggagcagttagttttcatctcctcagtaagc
attttggatgagggcattcagatagcagctcaagtagagagcgttgtataaaccaacact
gtatctaagacttttctttttgactcatagagaattattaaacaattcattaagtaaaaa
aattgagatagaacaaaattgatttgaaaaaatagtactgttttcctgaaataaaatatt
taagtagacatggaagttcttattatataacgagtgctttgagatgggaaaaatggcaaa
acacgtttccccaggacacctcctccacagaagagcttgagggatggtcctccgtaggtt
aagacgatgaagctcaagggttcataacctaggctctttgaaagaaaagtggcttatcac
ctcttcctctctgaaaacgttctgagagtcctagtcagagggaattaggcttggctttaa
tgagcgcgctctattgtttggggttgggcagccctggaatgtcctctccccctgtcccga
aggaggggaggggatgctggtgatttcttaggtttcacagtgggtttcactcctaggtgt
ttctcctttctctgtgccagcaaggatcaatgcagcccatcccagcttgaaagaggatct
gtgatcaaaggcatcaatgatgtcactgatctccagtgattgattaggaccagaagttcc
agagacttcggcattttctgagaatttcaaattcacttgtgtctacaactaggcttactt
gggattattagcatttaaccagcaaaattgttaaagtggaccacgctgctacacctgtgg
ccctgccagtgtgcttaagcctatggaaacgatgaccacattttataagcatcatttttt
aaattataccgttaataaatagtatgtctgtgaattggtgcaaggaacttggaattctgt
gtgcaattggaagccaTTTGGGAATGAAGACCTTGTCT
Primer
(+)tacactacgtcccttccatcct
(+)AGACAAGGTCTTCATTCCCAAA


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